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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3001 A_BomoMG_comp18635_c0_seq1
232bp
FPKM:0.44 TPM:0.35
3002 A_BomoMG_comp18636_c0_seq1
675bp
 calcitonin_gene-related_peptide-receptor_component_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0009360 C DNA polymerase III complex
GO:0016020 C membrane
GO:0044237 P cellular metabolic process
FPKM:2.39 TPM:1.89
3003 A_BomoMG_comp18636_c1_seq1
317bp
 predicted_protein_[Thalassiosira_pseudonana_CCMP1335]
FPKM:2.19 TPM:1.73
3004 A_BomoMG_comp186372_c0_seq1
240bp
FPKM:4.01 TPM:3.17
3005 A_BomoMG_comp18638_c0_seq1
772bp
 PREDICTED:_uncharacterized_protein_LOC106136109_[Amyelois_transitella]
FPKM:1.96 TPM:1.55
3006 A_BomoMG_comp18638_c1_seq1
544bp
 PREDICTED:_uncharacterized_protein_LOC106121852_[Papilio_xuthus]
FPKM:1.78 TPM:1.40
3007 A_BomoMG_comp18640_c0_seq1
227bp
 PREDICTED:_probable_palmitoyltransferase_ZDHHC16_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
FPKM:4.65 TPM:3.67
3008 A_BomoMG_comp18640_c1_seq1
217bp
 PREDICTED:_probable_palmitoyltransferase_ZDHHC16_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0055038 C recycling endosome membrane
FPKM:3.70 TPM:2.93
3009 A_BomoMG_comp186420_c0_seq1
1101bp
 PREDICTED:_protein_asunder-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007346 P regulation of mitotic cell cycle
GO:0030317 P flagellated sperm motility
GO:0051301 P cell division
GO:0051642 P centrosome localization
GO:0080154 P regulation of fertilization
GO:0090435 P protein localization to nuclear envelope
FPKM:3.07 TPM:2.43
3010 A_BomoMG_comp186439_c0_seq1
272bp
 hypothetical_protein_[Candidatus_Nitrosopumilus_salaria]
FPKM:5.07 TPM:4.01
3011 A_BomoMG_comp18643_c0_seq1
440bp
 PREDICTED:_WASH_complex_subunit_7_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0006887 P exocytosis
GO:0007032 P endosome organization
GO:0016197 P endosomal transport
GO:0030041 P actin filament polymerization
GO:0044351 P macropinocytosis
GO:0044655 P phagosome reneutralization
GO:0061462 P protein localization to lysosome
GO:0061474 C phagolysosome membrane
GO:0071203 C WASH complex
FPKM:2.54 TPM:2.01
3012 A_BomoMG_comp18644_c0_seq1
428bp
 PREDICTED:_uncharacterized_protein_LOC101745877_isoform_X3_[Bombyx_mori]
FPKM:3.04 TPM:2.41
3013 A_BomoMG_comp18644_c1_seq1
325bp
 PREDICTED:_uncharacterized_protein_LOC101745877_isoform_X2_[Bombyx_mori]
FPKM:2.09 TPM:1.65
3014 A_BomoMG_comp18645_c0_seq1
311bp
FPKM:1.59 TPM:1.26
3015 A_BomoMG_comp18646_c0_seq1
393bp
FPKM:2.57 TPM:2.03
3016 A_BomoMG_comp186475_c0_seq1
820bp
 PREDICTED:_exportin-4-like_[Bombyx_mori]
GO:0005049 F nuclear export signal receptor activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0008536 F small GTPase binding
GO:0015031 P protein transport
FPKM:2.92 TPM:2.31
3017 A_BomoMG_comp186487_c0_seq1
710bp
 PREDICTED:_uncharacterized_protein_LOC105841366_[Bombyx_mori]
FPKM:3.03 TPM:2.40
3018 A_BomoMG_comp18649_c0_seq1
467bp
 PREDICTED:_ABC_transporter_G_family_member_23_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
FPKM:1.74 TPM:1.38
3019 A_BomoMG_comp18650_c0_seq1
415bp
 transient_receptor_potential_channel_pyrexia_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005261 F cation channel activity
GO:0005262 F calcium channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006816 P calcium ion transport
GO:0009408 P response to heat
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034220 P ion transmembrane transport
GO:0034703 C cation channel complex
GO:0048060 P negative gravitaxis
GO:0050896 P response to stimulus
GO:0051290 P protein heterotetramerization
GO:0055085 P transmembrane transport
GO:0070588 P calcium ion transmembrane transport
GO:0098655 P cation transmembrane transport
FPKM:2.64 TPM:2.08
3020 A_BomoMG_comp18650_c1_seq1
602bp
 transient_receptor_potential_channel_pyrexia_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005261 F cation channel activity
GO:0005262 F calcium channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006816 P calcium ion transport
GO:0009408 P response to heat
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034220 P ion transmembrane transport
GO:0034703 C cation channel complex
GO:0048060 P negative gravitaxis
GO:0050896 P response to stimulus
GO:0051290 P protein heterotetramerization
GO:0055085 P transmembrane transport
GO:0070588 P calcium ion transmembrane transport
GO:0098655 P cation transmembrane transport
FPKM:1.22 TPM:0.97
3021 A_BomoMG_comp186513_c0_seq1
561bp
FPKM:2.69 TPM:2.13
3022 A_BomoMG_comp18651_c0_seq1
993bp
 putative_Ofd1_protein_[Operophtera_brumata]
FPKM:1.93 TPM:1.52
3023 A_BomoMG_comp18651_c1_seq1
365bp
 putative_Ofd1_protein_[Danaus_plexippus]
FPKM:1.88 TPM:1.48
3024 A_BomoMG_comp186521_c0_seq1
495bp
FPKM:3.10 TPM:2.45
3025 A_BomoMG_comp186524_c0_seq1
510bp
 PREDICTED:_SAGA-associated_factor_29_homolog_[Plutella_xylostella]
FPKM:4.30 TPM:3.40
3026 A_BomoMG_comp18655_c0_seq1
281bp
 PREDICTED:_histone-lysine_N-methyltransferase_2D-like,_partial_[Bombyx_mori]
FPKM:2.78 TPM:2.20
3027 A_BomoMG_comp18655_c1_seq1
441bp
 PREDICTED:_histone-lysine_N-methyltransferase_2D-like,_partial_[Bombyx_mori]
FPKM:1.39 TPM:1.10
3028 A_BomoMG_comp18656_c0_seq1
244bp
FPKM:1.54 TPM:1.22
3029 A_BomoMG_comp186572_c0_seq1
1281bp
 putative_anaphase-promoting_complex_subunit_[Operophtera_brumata]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0019903 F protein phosphatase binding
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051439 P obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 P protein K11-linked ubiquitination
FPKM:2.58 TPM:2.04
3030 A_BomoMG_comp18657_c0_seq1
275bp
 PREDICTED:_polyribonucleotide_nucleotidyltransferase_1,_mitochondrial-like_[Plutella_xylostella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000957 P mitochondrial RNA catabolic process
GO:0000958 P mitochondrial mRNA catabolic process
GO:0000962 P positive regulation of mitochondrial RNA catabolic process
GO:0000964 P mitochondrial RNA 5'-end processing
GO:0000965 P mitochondrial RNA 3'-end processing
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004654 F polyribonucleotide nucleotidyltransferase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0006402 P mRNA catabolic process
GO:0006810 P transport
GO:0008266 F poly(U) RNA binding
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0034046 F poly(G) binding
GO:0034599 P cellular response to oxidative stress
GO:0035198 F miRNA binding
GO:0035927 P RNA import into mitochondrion
GO:0035928 P rRNA import into mitochondrion
GO:0043457 P regulation of cellular respiration
GO:0043631 P RNA polyadenylation
GO:0045025 C mitochondrial degradosome
GO:0045926 P negative regulation of growth
GO:0051260 P protein homooligomerization
GO:0061014 P positive regulation of mRNA catabolic process
GO:0070207 P protein homotrimerization
GO:0070584 P mitochondrion morphogenesis
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
GO:0071850 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:0097222 P mitochondrial mRNA polyadenylation
GO:2000627 P positive regulation of miRNA catabolic process
GO:2000772 P regulation of cellular senescence
FPKM:3.50 TPM:2.76
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