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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2941 A_BomoMG_comp18583_c0_seq1
384bp
 PREDICTED:_uncharacterized_protein_LOC105456676_[Wasmannia_auropunctata]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.36 TPM:1.86
2942 A_BomoMG_comp18585_c0_seq1
235bp
FPKM:2.54 TPM:2.01
2943 A_BomoMG_comp18586_c0_seq1
352bp
FPKM:1.63 TPM:1.29
2944 A_BomoMG_comp18587_c0_seq1
379bp
 PREDICTED:_uncharacterized_protein_LOC105842915,_partial_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0015074 P DNA integration
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0075713 P establishment of integrated proviral latency
FPKM:2.25 TPM:1.77
2945 A_BomoMG_comp18589_c0_seq1
375bp
 Ribose-5-phosphate_isomerase_B_[Candidatus_Nomurabacteria_bacterium_GW2011_GWF2_35_12]
FPKM:2.12 TPM:1.68
2946 A_BomoMG_comp185906_c0_seq1
926bp
 PREDICTED:_uracil_phosphoribosyltransferase_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
FPKM:3.38 TPM:2.67
2947 A_BomoMG_comp185907_c0_seq1
582bp
 PREDICTED:_WD_repeat_and_FYVE_domain-containing_protein_3_[Bombyx_mori]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
FPKM:2.82 TPM:2.23
2948 A_BomoMG_comp18591_c0_seq1
447bp
FPKM:0.99 TPM:0.78
2949 A_BomoMG_comp185929_c0_seq1
803bp
FPKM:3.56 TPM:2.82
2950 A_BomoMG_comp185943_c0_seq1
691bp
FPKM:3.07 TPM:2.43
2951 A_BomoMG_comp18594_c0_seq1
441bp
 valine--tRNA_ligase_[Alistipes_putredinis_CAG:67]
FPKM:1.77 TPM:1.40
2952 A_BomoMG_comp185958_c0_seq1
1525bp
FPKM:1.80 TPM:1.42
2953 A_BomoMG_comp18597_c0_seq1
449bp
FPKM:2.46 TPM:1.95
2954 A_BomoMG_comp185989_c0_seq1
620bp
FPKM:2.51 TPM:1.99
2955 A_BomoMG_comp18598_c0_seq1
453bp
 PREDICTED:_uncharacterized_protein_LOC101739009_[Bombyx_mori]
FPKM:1.70 TPM:1.34
2956 A_BomoMG_comp18598_c1_seq1
672bp
 PREDICTED:_uncharacterized_protein_LOC101739009_[Bombyx_mori]
FPKM:2.33 TPM:1.84
2957 A_BomoMG_comp185991_c0_seq1
468bp
 PREDICTED:_zinc_finger_CCHC_domain-containing_protein_4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
FPKM:3.82 TPM:3.02
2958 A_BomoMG_comp185994_c0_seq1
621bp
 PREDICTED:_PAXIP1-associated_glutamate-rich_protein_1_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0030331 F estrogen receptor binding
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0035097 C histone methyltransferase complex
GO:0044666 C MLL3/4 complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048304 P positive regulation of isotype switching to IgG isotypes
GO:0060717 P chorion development
GO:0071557 P histone H3-K27 demethylation
GO:1902749 P regulation of cell cycle G2/M phase transition
GO:1902808 P positive regulation of cell cycle G1/S phase transition
GO:2001022 P positive regulation of response to DNA damage stimulus
FPKM:3.60 TPM:2.85
2959 A_BomoMG_comp18600_c0_seq1
316bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101741510_[Bombyx_mori]
FPKM:2.87 TPM:2.27
2960 A_BomoMG_comp18600_c1_seq1
329bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101741510_[Bombyx_mori]
FPKM:2.66 TPM:2.10
2961 A_BomoMG_comp186013_c0_seq1
528bp
FPKM:3.41 TPM:2.70
2962 A_BomoMG_comp18602_c0_seq1
259bp
 phosphoenolpyruvate_synthase_[Desulfotomaculum_sp._BICA1-6]
FPKM:2.66 TPM:2.10
2963 A_BomoMG_comp186031_c0_seq1
280bp
 PREDICTED:_protein_charlatan_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001654 P eye development
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007399 P nervous system development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007526 P larval somatic muscle development
GO:0009612 P response to mechanical stimulus
GO:0042683 P negative regulation of compound eye cone cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
FPKM:4.77 TPM:3.77
2964 A_BomoMG_comp18603_c0_seq1
298bp
FPKM:2.22 TPM:1.76
2965 A_BomoMG_comp18604_c0_seq1
603bp
 PREDICTED:_histone-lysine_N-methyltransferase,_H3_lysine-79_specific_isoform_X7_[Bombyx_mori]
GO:0000781 C chromosome, telomeric region
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0006348 P subtelomeric heterochromatin assembly
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030702 P pericentric heterochromatin assembly
GO:0031151 F histone methyltransferase activity (H3-K79 specific)
GO:0032259 P methylation
GO:0034729 P histone H3-K79 methylation
GO:0035097 C histone methyltransferase complex
GO:0046331 P lateral inhibition
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0051726 P regulation of cell cycle
GO:2000637 P positive regulation of gene silencing by miRNA
FPKM:1.79 TPM:1.42
2966 A_BomoMG_comp186065_c0_seq1
549bp
 Calreticulin,_partial_[Podiceps_cristatus]
FPKM:2.77 TPM:2.19
2967 A_BomoMG_comp18606_c0_seq1
275bp
 Histone_H2A_deubiquitinase_MYSM1_[Papilio_xuthus]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:2.92 TPM:2.30
2968 A_BomoMG_comp186072_c0_seq1
347bp
 PREDICTED:_IQ_and_ubiquitin-like_domain-containing_protein_[Anolis_carolinensis]
FPKM:4.47 TPM:3.53
2969 A_BomoMG_comp186075_c0_seq1
636bp
FPKM:3.65 TPM:2.88
2970 A_BomoMG_comp186083_c0_seq1
277bp
FPKM:5.74 TPM:4.54
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