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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2791 A_BomoMG_comp18432_c0_seq1
1331bp
 PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A-like_protein_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000733 P obsolete DNA strand renaturation
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006259 P DNA metabolic process
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036292 P DNA rewinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0071932 P replication fork reversal
GO:1990163 F four-way junction helicase activity
FPKM:2.16 TPM:1.71
2792 A_BomoMG_comp18435_c0_seq1
548bp
 PREDICTED:_zinc_finger_protein_836-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.32 TPM:1.83
2793 A_BomoMG_comp18435_c1_seq1
592bp
 PREDICTED:_zinc_finger_protein_836-like_[Bombyx_mori]
FPKM:1.25 TPM:0.99
2794 A_BomoMG_comp18436_c0_seq1
417bp
 PREDICTED:_coiled-coil_domain-containing_protein_KIAA1407_homolog,_partial_[Papilio_machaon]
FPKM:0.96 TPM:0.76
2795 A_BomoMG_comp18444_c0_seq1
348bp
 hypothetical_protein_SELMODRAFT_438401_[Selaginella_moellendorffii]
FPKM:2.41 TPM:1.90
2796 A_BomoMG_comp18444_c1_seq1
403bp
 PREDICTED:_zinc_finger_protein_395_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.60 TPM:1.26
2797 A_BomoMG_comp184454_c0_seq1
559bp
FPKM:2.07 TPM:1.64
2798 A_BomoMG_comp18445_c0_seq1
470bp
 cyclin-dependent_kinase_2_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008283 P cell population proliferation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0045023 P G0 to G1 transition
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
FPKM:0.97 TPM:0.77
2799 A_BomoMG_comp18445_c0_seq2
447bp
 cyclin-dependent_kinase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002088 P lens development in camera-type eye
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0009636 P response to toxic substance
GO:0015030 C Cajal body
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030332 F cyclin binding
GO:0031100 P animal organ regeneration
GO:0032355 P response to estradiol
GO:0032403 F protein-containing complex binding
GO:0032869 P cellular response to insulin stimulus
GO:0042493 P response to xenobiotic stimulus
GO:0043231 C intracellular membrane-bounded organelle
GO:0045471 P response to ethanol
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0051591 P response to cAMP
GO:0051602 P response to electrical stimulus
GO:0051726 P regulation of cell cycle
FPKM:0.81 TPM:0.64
2800 A_BomoMG_comp18446_c0_seq1
1225bp
 PREDICTED:_TELO2-interacting_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032006 P regulation of TOR signaling
FPKM:2.27 TPM:1.79
2801 A_BomoMG_comp18446_c1_seq1
301bp
 PREDICTED:_TELO2-interacting_protein_1_homolog_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0032006 P regulation of TOR signaling
FPKM:1.94 TPM:1.53
2802 A_BomoMG_comp18447_c0_seq1
260bp
 PREDICTED:_chondroitin_sulfate_proteoglycan_4_[Amyelois_transitella]
GO:0000187 P obsolete activation of MAPK activity
GO:0001525 P angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0008347 P glial cell migration
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016477 P cell migration
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0030203 P glycosaminoglycan metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0030207 P chondroitin sulfate catabolic process
GO:0030208 P dermatan sulfate biosynthetic process
GO:0031258 C lamellipodium membrane
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0043202 C lysosomal lumen
GO:0048771 P tissue remodeling
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0070062 C extracellular exosome
FPKM:1.65 TPM:1.30
2803 A_BomoMG_comp18447_c1_seq1
209bp
 PREDICTED:_chondroitin_sulfate_proteoglycan_4_[Papilio_xuthus]
GO:0000187 P obsolete activation of MAPK activity
GO:0001525 P angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0008283 P cell population proliferation
GO:0008347 P glial cell migration
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0031258 C lamellipodium membrane
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0048771 P tissue remodeling
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0070062 C extracellular exosome
FPKM:1.19 TPM:0.94
2804 A_BomoMG_comp18448_c0_seq1
201bp
FPKM:1.35 TPM:1.07
2805 A_BomoMG_comp18449_c0_seq1
338bp
FPKM:1.17 TPM:0.92
2806 A_BomoMG_comp18450_c0_seq1
392bp
FPKM:1.06 TPM:0.84
2807 A_BomoMG_comp18451_c0_seq1
1108bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005743 C mitochondrial inner membrane
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031625 F ubiquitin protein ligase binding
GO:0032183 F SUMO binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
FPKM:2.01 TPM:1.59
2808 A_BomoMG_comp18451_c1_seq1
308bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC2_[Bombyx_mori]
FPKM:1.39 TPM:1.10
2809 A_BomoMG_comp18455_c0_seq1
266bp
 PREDICTED:_kettin_protein_isoform_X1_[Bombyx_mori]
GO:0000794 C condensed nuclear chromosome
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005863 C striated muscle myosin thick filament
GO:0005875 C microtubule associated complex
GO:0007049 P cell cycle
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0007498 P mesoderm development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0007520 P myoblast fusion
GO:0007522 P visceral muscle development
GO:0007525 P somatic muscle development
GO:0008307 F structural constituent of muscle
GO:0016203 P muscle attachment
GO:0019233 P sensory perception of pain
GO:0030017 C sarcomere
GO:0030018 C Z disc
GO:0031674 C I band
GO:0035206 P regulation of hemocyte proliferation
GO:0040011 P locomotion
GO:0045214 P sarcomere organization
GO:0051301 P cell division
FPKM:2.82 TPM:2.23
2810 A_BomoMG_comp18459_c0_seq1
410bp
 PREDICTED:_putative_inactive_cysteine_synthase_2_[Amyelois_transitella]
GO:0004124 F cysteine synthase activity
GO:0006535 P cysteine biosynthetic process from serine
GO:0008652 P cellular amino acid biosynthetic process
GO:0016740 F transferase activity
GO:0019344 P cysteine biosynthetic process
FPKM:2.12 TPM:1.68
2811 A_BomoMG_comp18460_c0_seq1
203bp
 PREDICTED:_lymphokine-activated_killer_T-cell-originated_protein_kinase_homolog_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0001933 P negative regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032873 P negative regulation of stress-activated MAPK cascade
GO:0034644 P cellular response to UV
GO:0050728 P negative regulation of inflammatory response
FPKM:3.26 TPM:2.58
2812 A_BomoMG_comp18461_c0_seq1
264bp
 PREDICTED:_fatty_acid_synthase-like_[Bombyx_mori]
FPKM:2.87 TPM:2.27
2813 A_BomoMG_comp18462_c0_seq1
212bp
FPKM:3.97 TPM:3.14
2814 A_BomoMG_comp18463_c0_seq1
287bp
 PREDICTED:_type_I_inositol_3,4-bisphosphate_4-phosphatase-like_[Bombyx_mori]
FPKM:2.40 TPM:1.89
2815 A_BomoMG_comp18465_c0_seq1
214bp
FPKM:3.86 TPM:3.05
2816 A_BomoMG_comp18466_c0_seq1
231bp
 PREDICTED:_protein_melted_isoform_X2_[Bombyx_mori]
GO:0001708 P cell fate specification
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007422 P peripheral nervous system development
GO:0008152 P metabolic process
GO:0008286 P insulin receptor signaling pathway
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0016020 C membrane
GO:0030730 P sequestering of triglyceride
GO:0035091 F phosphatidylinositol binding
GO:0045464 P R8 cell fate specification
GO:2001020 P regulation of response to DNA damage stimulus
FPKM:0.00 TPM:0.00
2817 A_BomoMG_comp18466_c0_seq2
337bp
 PREDICTED:_protein_melted_isoform_X3_[Bombyx_mori]
GO:0001708 P cell fate specification
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007422 P peripheral nervous system development
GO:0008152 P metabolic process
GO:0008286 P insulin receptor signaling pathway
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0016020 C membrane
GO:0030730 P sequestering of triglyceride
GO:0035091 F phosphatidylinositol binding
GO:0045464 P R8 cell fate specification
GO:2001020 P regulation of response to DNA damage stimulus
FPKM:1.96 TPM:1.55
2818 A_BomoMG_comp18468_c0_seq1
206bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.11 TPM:2.46
2819 A_BomoMG_comp18470_c0_seq1
394bp
FPKM:1.51 TPM:1.19
2820 A_BomoMG_comp18470_c1_seq1
410bp
FPKM:2.83 TPM:2.24
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