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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1951 A_BomoMG_comp17524_c0_seq1
454bp
FPKM:3.03 TPM:2.39
1952 A_BomoMG_comp17525_c0_seq1
446bp
FPKM:2.86 TPM:2.26
1953 A_BomoMG_comp175266_c0_seq1
497bp
FPKM:3.40 TPM:2.68
1954 A_BomoMG_comp17526_c0_seq1
1207bp
 PREDICTED:_GTP-binding_protein_10_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003674 F molecular_function
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0042254 P ribosome biogenesis
FPKM:2.27 TPM:1.80
1955 A_BomoMG_comp17527_c0_seq1
413bp
 nuclear_orphan_receptor_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0030154 P cell differentiation
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:3.28 TPM:2.59
1956 A_BomoMG_comp17527_c0_seq2
231bp
 PREDICTED:_nuclear_orphan_receptor_isoform_X2_[Bombyx_mori]
FPKM:1.13 TPM:0.89
1957 A_BomoMG_comp175286_c0_seq1
208bp
FPKM:3.01 TPM:2.38
1958 A_BomoMG_comp17528_c0_seq1
704bp
 hypothetical_protein_[Agarivorans_gilvus]
FPKM:2.47 TPM:1.95
1959 A_BomoMG_comp17529_c0_seq1
404bp
FPKM:2.32 TPM:1.83
1960 A_BomoMG_comp17530_c0_seq1
874bp
 PREDICTED:_structural_maintenance_of_chromosomes_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000803 C sex chromosome
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016605 C PML body
GO:0016607 C nuclear speck
GO:0016925 P protein sumoylation
GO:0030915 C Smc5-Smc6 complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035061 C interchromatin granule
GO:0035861 C site of double-strand break
GO:0051984 P positive regulation of chromosome segregation
GO:0090398 P cellular senescence
FPKM:0.48 TPM:0.38
1961 A_BomoMG_comp17530_c0_seq2
756bp
 PREDICTED:_structural_maintenance_of_chromosomes_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0030915 C Smc5-Smc6 complex
GO:0033676 F double-stranded DNA helicase activity
GO:0051321 P meiotic cell cycle
FPKM:2.72 TPM:2.15
1962 A_BomoMG_comp175331_c0_seq1
696bp
FPKM:2.84 TPM:2.24
1963 A_BomoMG_comp175347_c0_seq1
439bp
 histidyl-tRNA_synthetase_[Microbotryum_lychnidis-dioicae_p1A1_Lamole]
FPKM:4.20 TPM:3.32
1964 A_BomoMG_comp17534_c0_seq1
419bp
FPKM:2.87 TPM:2.27
1965 A_BomoMG_comp175355_c0_seq1
584bp
FPKM:2.21 TPM:1.75
1966 A_BomoMG_comp17535_c0_seq1
754bp
 PREDICTED:_prolyl_3-hydroxylase_sudestada1,_partial_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006449 P regulation of translational termination
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0018126 P protein hydroxylation
GO:0019511 P peptidyl-proline hydroxylation
GO:0031418 F L-ascorbic acid binding
GO:0031543 F peptidyl-proline dioxygenase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.94 TPM:2.32
1967 A_BomoMG_comp17536_c0_seq1
1076bp
 PREDICTED:_uncharacterized_protein_C9orf78_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
FPKM:2.68 TPM:2.11
1968 A_BomoMG_comp17538_c0_seq1
386bp
FPKM:2.65 TPM:2.09
1969 A_BomoMG_comp17539_c0_seq1
720bp
 PREDICTED:_uncharacterized_protein_LOC105390905_[Plutella_xylostella]
FPKM:2.40 TPM:1.89
1970 A_BomoMG_comp17544_c0_seq1
554bp
FPKM:2.28 TPM:1.80
1971 A_BomoMG_comp17545_c0_seq1
805bp
FPKM:3.16 TPM:2.50
1972 A_BomoMG_comp175470_c0_seq1
355bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
FPKM:3.93 TPM:3.11
1973 A_BomoMG_comp17547_c0_seq1
358bp
 hypothetical_protein_[Lysinibacillus_sphaericus]
FPKM:3.53 TPM:2.79
1974 A_BomoMG_comp17547_c1_seq1
608bp
FPKM:2.82 TPM:2.23
1975 A_BomoMG_comp17548_c0_seq1
341bp
 PREDICTED:_kinesin-like_protein_KIF21A_isoform_X5_[Bombyx_mori]
FPKM:4.22 TPM:3.34
1976 A_BomoMG_comp17549_c0_seq1
231bp
FPKM:1.33 TPM:1.05
1977 A_BomoMG_comp17550_c0_seq1
368bp
 PREDICTED:_uncharacterized_protein_LOC105842017_[Bombyx_mori]
FPKM:2.53 TPM:2.00
1978 A_BomoMG_comp17551_c0_seq1
455bp
FPKM:2.54 TPM:2.00
1979 A_BomoMG_comp17552_c0_seq1
637bp
 PREDICTED:_MIT_domain-containing_protein_1-like_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0000920 P septum digestion after cytokinesis
GO:0005768 C endosome
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0019904 F protein domain specific binding
GO:0030496 C midbody
GO:0031902 C late endosome membrane
GO:0032091 P negative regulation of protein binding
GO:0035091 F phosphatidylinositol binding
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0051301 P cell division
GO:0070062 C extracellular exosome
FPKM:2.55 TPM:2.01
1980 A_BomoMG_comp17552_c0_seq2
417bp
 PREDICTED:_MIT_domain-containing_protein_1-like_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0000920 P septum digestion after cytokinesis
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0019904 F protein domain specific binding
GO:0030496 C midbody
GO:0031902 C late endosome membrane
GO:0032091 P negative regulation of protein binding
GO:0035091 F phosphatidylinositol binding
GO:0039702 P viral budding via host ESCRT complex
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0051301 P cell division
GO:0070062 C extracellular exosome
GO:0071985 P multivesicular body sorting pathway
FPKM:0.46 TPM:0.37
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