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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1891 A_BomoMG_comp17463_c0_seq1
1566bp
 PREDICTED:_DNA_replication_factor_Cdt1_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0007049 P cell cycle
FPKM:1.96 TPM:1.55
1892 A_BomoMG_comp17464_c0_seq1
326bp
FPKM:1.36 TPM:1.07
1893 A_BomoMG_comp17464_c0_seq2
434bp
FPKM:0.71 TPM:0.56
1894 A_BomoMG_comp17465_c0_seq1
691bp
 PREDICTED:_exosome_complex_component_RRP46_[Amyelois_transitella]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006401 P RNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
FPKM:2.66 TPM:2.10
1895 A_BomoMG_comp17466_c0_seq1
925bp
FPKM:2.67 TPM:2.11
1896 A_BomoMG_comp174675_c0_seq1
644bp
FPKM:1.87 TPM:1.48
1897 A_BomoMG_comp17467_c0_seq1
654bp
FPKM:2.56 TPM:2.03
1898 A_BomoMG_comp17468_c0_seq1
547bp
 putative_cuticle_protein_CPH41_[Bombyx_mori]
GO:0000070 P mitotic sister chromatid segregation
GO:0000278 P mitotic cell cycle
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000940 C outer kinetochore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005819 C spindle
GO:0005828 C kinetochore microtubule
GO:0005856 C cytoskeleton
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007060 P male meiosis chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007107 P membrane addition at site of cytokinesis
GO:0007112 P male meiosis cytokinesis
GO:0017137 F small GTPase binding
GO:0022008 P neurogenesis
GO:0036063 C acroblast
GO:0036090 P cleavage furrow ingression
GO:0048193 P Golgi vesicle transport
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0070939 C Dsl1/NZR complex
GO:1990423 C RZZ complex
FPKM:2.88 TPM:2.27
1899 A_BomoMG_comp17469_c0_seq1
627bp
 hypothetical_protein_KGM_08765_[Danaus_plexippus]
FPKM:2.40 TPM:1.90
1900 A_BomoMG_comp17470_c0_seq1
846bp
 PREDICTED:_uncharacterized_protein_LOC106133797_[Amyelois_transitella]
FPKM:2.65 TPM:2.10
1901 A_BomoMG_comp17471_c0_seq1
353bp
FPKM:3.07 TPM:2.43
1902 A_BomoMG_comp17472_c0_seq1
909bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0009036 F type II site-specific deoxyribonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0032197 P transposition, RNA-mediated
GO:0032199 P reverse transcription involved in RNA-mediated transposition
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.75 TPM:1.39
1903 A_BomoMG_comp174730_c0_seq1
1273bp
 PREDICTED:_exonuclease_mut-7_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.75 TPM:1.38
1904 A_BomoMG_comp17473_c0_seq1
495bp
 hypothetical_protein_RR46_05044_[Papilio_xuthus]
FPKM:1.60 TPM:1.27
1905 A_BomoMG_comp17474_c0_seq1
371bp
 Sphingosine_kinase_a,_b,_partial_[Operophtera_brumata]
FPKM:3.32 TPM:2.63
1906 A_BomoMG_comp174758_c0_seq1
898bp
 guanylate_kinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004385 F guanylate kinase activity
GO:0005524 F ATP binding
GO:0006163 P purine nucleotide metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046037 P GMP metabolic process
GO:0046710 P GDP metabolic process
FPKM:2.52 TPM:1.99
1907 A_BomoMG_comp17475_c0_seq1
322bp
FPKM:2.98 TPM:2.36
1908 A_BomoMG_comp17476_c0_seq1
298bp
 PREDICTED:_eukaryotic_translation_initiation_factor_4E_transporter-like_[Bombyx_mori]
FPKM:3.21 TPM:2.54
1909 A_BomoMG_comp17477_c0_seq1
271bp
FPKM:4.21 TPM:3.33
1910 A_BomoMG_comp17478_c0_seq1
302bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:2.89 TPM:2.28
1911 A_BomoMG_comp17479_c0_seq1
286bp
FPKM:3.22 TPM:2.54
1912 A_BomoMG_comp17480_c0_seq1
376bp
 PREDICTED:_ATP-dependent_DNA_helicase_Q4_[Bombyx_mori]
FPKM:2.28 TPM:1.80
1913 A_BomoMG_comp17480_c1_seq1
226bp
 PREDICTED:_ATP-dependent_DNA_helicase_Q4_[Bombyx_mori]
FPKM:3.29 TPM:2.60
1914 A_BomoMG_comp17482_c0_seq1
209bp
FPKM:2.97 TPM:2.34
1915 A_BomoMG_comp17484_c0_seq1
351bp
 PREDICTED:_LIM_domain_kinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001736 P establishment of planar polarity
GO:0001737 P establishment of imaginal disc-derived wing hair orientation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007416 P synapse assembly
GO:0007560 P imaginal disc morphogenesis
GO:0008270 F zinc ion binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0048812 P neuron projection morphogenesis
GO:0050770 P regulation of axonogenesis
GO:0051124 P synaptic assembly at neuromuscular junction
FPKM:3.83 TPM:3.03
1916 A_BomoMG_comp17484_c0_seq2
300bp
 PREDICTED:_LIM_domain_kinase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001736 P establishment of planar polarity
GO:0001737 P establishment of imaginal disc-derived wing hair orientation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007416 P synapse assembly
GO:0007560 P imaginal disc morphogenesis
GO:0008270 F zinc ion binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0048812 P neuron projection morphogenesis
GO:0050770 P regulation of axonogenesis
GO:0051124 P synaptic assembly at neuromuscular junction
FPKM:0.00 TPM:0.00
1917 A_BomoMG_comp17485_c0_seq1
386bp
 RNA_polymerase_subunit_sigma-24_[Syntrophomonas_wolfei]
FPKM:2.49 TPM:1.97
1918 A_BomoMG_comp17485_c1_seq1
312bp
FPKM:0.90 TPM:0.71
1919 A_BomoMG_comp17486_c0_seq1
305bp
FPKM:4.45 TPM:3.52
1920 A_BomoMG_comp17486_c0_seq2
344bp
FPKM:1.16 TPM:0.92
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