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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1711 A_BomoMG_comp172804_c0_seq1
259bp
FPKM:5.66 TPM:4.48
1712 A_BomoMG_comp17280_c0_seq1
284bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_DNA_polymerase_epsilon_catalytic_subunit_A_[Plutella_xylostella]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0000731 P DNA synthesis involved in DNA repair
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006287 P base-excision repair, gap-filling
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008408 F 3'-5' exonuclease activity
GO:0008622 C epsilon DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.81 TPM:3.01
1713 A_BomoMG_comp17281_c0_seq1
309bp
 PREDICTED:_uncharacterized_protein_LOC101741794_[Bombyx_mori]
FPKM:3.22 TPM:2.55
1714 A_BomoMG_comp172825_c0_seq1
1052bp
 PREDICTED:_histone_acetyltransferase_KAT7_[Amyelois_transitella]
GO:0000123 C histone acetyltransferase complex
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0043966 P histone H3 acetylation
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043983 P histone H4-K12 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0046872 F metal ion binding
GO:1900182 P positive regulation of protein localization to nucleus
FPKM:3.36 TPM:2.66
1715 A_BomoMG_comp172851_c0_seq1
255bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:7.26 TPM:5.73
1716 A_BomoMG_comp17285_c0_seq1
837bp
FPKM:2.01 TPM:1.58
1717 A_BomoMG_comp17286_c0_seq1
380bp
FPKM:2.56 TPM:2.02
1718 A_BomoMG_comp17287_c0_seq1
257bp
FPKM:3.39 TPM:2.68
1719 A_BomoMG_comp172886_c0_seq1
714bp
 PREDICTED:_nucleolar_complex_protein_4_homolog_B_isoform_X2_[Bombyx_mori]
FPKM:3.73 TPM:2.95
1720 A_BomoMG_comp17289_c0_seq1
260bp
 UDP-glucose_epimerase_[Bacillus_subterraneus]
FPKM:3.96 TPM:3.13
1721 A_BomoMG_comp17290_c0_seq1
316bp
 Protein_SERAC1_[Operophtera_brumata]
GO:0005578 C extracellular matrix
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030198 P extracellular matrix organization
FPKM:1.76 TPM:1.39
1722 A_BomoMG_comp17292_c0_seq1
357bp
FPKM:2.30 TPM:1.82
1723 A_BomoMG_comp17293_c0_seq1
351bp
 PREDICTED:_integrator_complex_subunit_10_[Bombyx_mori]
FPKM:2.56 TPM:2.02
1724 A_BomoMG_comp17293_c1_seq1
949bp
 Integrator_complex_subunit_10_[Operophtera_brumata]
GO:0005634 C nucleus
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
FPKM:2.04 TPM:1.61
1725 A_BomoMG_comp17294_c0_seq1
393bp
FPKM:1.66 TPM:1.31
1726 A_BomoMG_comp172958_c0_seq1
518bp
FPKM:2.60 TPM:2.06
1727 A_BomoMG_comp17295_c0_seq1
259bp
FPKM:3.67 TPM:2.90
1728 A_BomoMG_comp172963_c0_seq1
626bp
FPKM:3.02 TPM:2.39
1729 A_BomoMG_comp17297_c0_seq1
448bp
FPKM:1.73 TPM:1.37
1730 A_BomoMG_comp172987_c0_seq1
384bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:4.55 TPM:3.60
1731 A_BomoMG_comp173026_c0_seq1
474bp
FPKM:4.55 TPM:3.59
1732 A_BomoMG_comp17302_c0_seq1
348bp
 PREDICTED:_uncharacterized_protein_LOC105842184_[Bombyx_mori]
FPKM:2.04 TPM:1.61
1733 A_BomoMG_comp17303_c0_seq1
571bp
 PREDICTED:_voltage-dependent_L-type_calcium_channel_subunit_beta-2_isoform_X5_[Plutella_xylostella]
GO:0005244 F voltage-gated ion channel activity
GO:0005245 F voltage-gated calcium channel activity
GO:0005262 F calcium channel activity
GO:0005886 C plasma membrane
GO:0005891 C voltage-gated calcium channel complex
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0016020 C membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0042383 C sarcolemma
GO:0070588 P calcium ion transmembrane transport
FPKM:2.19 TPM:1.73
1734 A_BomoMG_comp17305_c0_seq1
209bp
FPKM:5.34 TPM:4.22
1735 A_BomoMG_comp17306_c0_seq1
325bp
FPKM:1.88 TPM:1.49
1736 A_BomoMG_comp17309_c0_seq1
326bp
 PREDICTED:_uncharacterized_protein_LOC101737722_[Bombyx_mori]
FPKM:2.29 TPM:1.81
1737 A_BomoMG_comp173102_c0_seq1
1051bp
 PREDICTED:_THO_complex_subunit_3_[Amyelois_transitella]
GO:0000346 C transcription export complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0031124 P mRNA 3'-end processing
GO:0046784 P viral mRNA export from host cell nucleus
GO:0051028 P mRNA transport
FPKM:2.71 TPM:2.14
1738 A_BomoMG_comp17311_c0_seq1
253bp
 PREDICTED:_laminin_subunit_alpha-1-like_isoform_X2_[Parasteatoda_tepidariorum]
FPKM:3.17 TPM:2.50
1739 A_BomoMG_comp17312_c0_seq1
496bp
 pyridoxine_kinase_[Lysinibacillus_xylanilyticus]
FPKM:2.13 TPM:1.68
1740 A_BomoMG_comp17312_c1_seq1
358bp
FPKM:2.47 TPM:1.95
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