SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1501 A_BomoMG_comp17075_c0_seq1
406bp
 PREDICTED:_synaptic_vesicle_glycoprotein_2C-like,_partial_[Bombyx_mori]
FPKM:1.87 TPM:1.48
1502 A_BomoMG_comp17076_c0_seq1
721bp
 PREDICTED:_uncharacterized_protein_LOC106713442_[Papilio_machaon]
FPKM:1.94 TPM:1.53
1503 A_BomoMG_comp17077_c0_seq1
306bp
FPKM:2.34 TPM:1.85
1504 A_BomoMG_comp17078_c0_seq1
333bp
 FancJ-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006281 P DNA repair
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031965 C nuclear membrane
GO:0032508 P DNA duplex unwinding
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
FPKM:0.96 TPM:0.76
1505 A_BomoMG_comp17078_c0_seq2
634bp
 FancJ-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006281 P DNA repair
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031965 C nuclear membrane
GO:0032508 P DNA duplex unwinding
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
FPKM:1.54 TPM:1.22
1506 A_BomoMG_comp17079_c0_seq1
262bp
 tRNA(Ile)-lysidine_synthetase_[Sporolactobacillus_vineae]
FPKM:2.92 TPM:2.31
1507 A_BomoMG_comp17080_c0_seq1
934bp
 PREDICTED:_regulation_of_nuclear_pre-mRNA_domain-containing_protein_2-like_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0016591 C RNA polymerase II, holoenzyme
GO:0042795 P snRNA transcription by RNA polymerase II
FPKM:1.65 TPM:1.30
1508 A_BomoMG_comp17081_c0_seq1
327bp
 PREDICTED:_proline_dehydrogenase_1,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004657 F proline dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006537 P glutamate biosynthetic process
GO:0006560 P proline metabolic process
GO:0006562 P proline catabolic process
GO:0007626 P locomotory behavior
GO:0010133 P proline catabolic process to glutamate
GO:0016491 F oxidoreductase activity
GO:0042331 P phototaxis
GO:0055114 P obsolete oxidation-reduction process
GO:0071949 F FAD binding
FPKM:2.48 TPM:1.96
1509 A_BomoMG_comp17083_c0_seq1
389bp
 Protein_folded_gastrulation_[Operophtera_brumata]
FPKM:2.31 TPM:1.82
1510 A_BomoMG_comp17084_c0_seq1
463bp
FPKM:1.65 TPM:1.30
1511 A_BomoMG_comp17085_c0_seq1
267bp
 carbamoyltransferase_[Phormidesmis_priestleyi_Ana]
FPKM:2.80 TPM:2.21
1512 A_BomoMG_comp17086_c0_seq1
656bp
 PREDICTED:_uncharacterized_protein_LOC105841321_[Bombyx_mori]
FPKM:1.97 TPM:1.56
1513 A_BomoMG_comp17088_c0_seq1
246bp
FPKM:3.39 TPM:2.68
1514 A_BomoMG_comp17089_c0_seq1
229bp
 PREDICTED:_uncharacterized_protein_LOC101737909_[Bombyx_mori]
FPKM:3.63 TPM:2.87
1515 A_BomoMG_comp170901_c0_seq1
462bp
FPKM:3.78 TPM:2.98
1516 A_BomoMG_comp17090_c0_seq1
480bp
 PREDICTED:_male_reproductive_organ_serine_protease_2_isoform_X1_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
FPKM:1.79 TPM:1.41
1517 A_BomoMG_comp17091_c0_seq1
464bp
FPKM:1.88 TPM:1.48
1518 A_BomoMG_comp17092_c0_seq1
498bp
FPKM:1.69 TPM:1.34
1519 A_BomoMG_comp17093_c0_seq1
389bp
 PREDICTED:_uncharacterized_protein_LOC106130818_isoform_X2_[Amyelois_transitella]
FPKM:2.15 TPM:1.70
1520 A_BomoMG_comp17095_c0_seq1
234bp
 PREDICTED:_disintegrin_and_metalloproteinase_domain-containing_protein_12_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006509 P membrane protein ectodomain proteolysis
GO:0007507 P heart development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0046872 F metal ion binding
FPKM:3.85 TPM:3.04
1521 A_BomoMG_comp17097_c0_seq1
249bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_isoform_X2_[Bombyx_mori]
FPKM:2.19 TPM:1.73
1522 A_BomoMG_comp17098_c0_seq1
363bp
 hypothetical_protein_RR48_03525_[Papilio_machaon]
FPKM:2.07 TPM:1.63
1523 A_BomoMG_comp17101_c0_seq1
369bp
FPKM:1.84 TPM:1.46
1524 A_BomoMG_comp17102_c0_seq1
367bp
 PREDICTED:_receptor-type_tyrosine-protein_phosphatase_N2_isoform_X2_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005788 C endoplasmic reticulum lumen
GO:0006470 P protein dephosphorylation
GO:0007269 P neurotransmitter secretion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030054 C cell junction
GO:0030141 C secretory granule
GO:0030658 C transport vesicle membrane
GO:0030667 C secretory granule membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0034260 P negative regulation of GTPase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0035773 P insulin secretion involved in cellular response to glucose stimulus
GO:0043195 C terminal bouton
GO:0043235 C receptor complex
GO:0045202 C synapse
FPKM:2.71 TPM:2.14
1525 A_BomoMG_comp171038_c0_seq1
904bp
FPKM:2.99 TPM:2.36
1526 A_BomoMG_comp17104_c0_seq1
207bp
 hypothetical_protein_PAXINDRAFT_17388_[Paxillus_involutus_ATCC_200175]
FPKM:4.28 TPM:3.38
1527 A_BomoMG_comp17105_c0_seq1
696bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101746575_[Bombyx_mori]
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0004531 F deoxyribonuclease II activity
GO:0005764 C lysosome
GO:0006259 P DNA metabolic process
GO:0006308 P DNA catabolic process
GO:0006309 P apoptotic DNA fragmentation
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0016787 F hydrolase activity
GO:0030218 P erythrocyte differentiation
GO:0070062 C extracellular exosome
FPKM:1.96 TPM:1.55
1528 A_BomoMG_comp17106_c0_seq1
1212bp
 putative_G-protein_coupled_receptor_125_[Papilio_machaon]
GO:0001525 P angiogenesis
GO:0001944 P vasculature development
GO:0002040 P sprouting angiogenesis
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:1990791 P dorsal root ganglion development
FPKM:1.95 TPM:1.54
1529 A_BomoMG_comp17108_c0_seq1
230bp
 PREDICTED:_angiomotin-like_2a,_partial_[Papilio_machaon]
FPKM:1.79 TPM:1.42
1530 A_BomoMG_comp17109_c0_seq1
857bp
 PREDICTED:_protein_takeout_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0007610 P behavior
GO:0007617 P mating behavior
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0007631 P feeding behavior
GO:0008049 P male courtship behavior
GO:0008343 P adult feeding behavior
GO:0032504 P multicellular organism reproduction
GO:0042594 P response to starvation
GO:0042595 P behavioral response to starvation
GO:0048511 P rhythmic process
FPKM:1.52 TPM:1.20
previous next from show/43914

- SilkBase 1999-2023 -