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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1531 A_BomoMG_comp17110_c0_seq1
208bp
FPKM:0.60 TPM:0.48
1532 A_BomoMG_comp17112_c0_seq1
390bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:2.14 TPM:1.69
1533 A_BomoMG_comp17113_c0_seq1
555bp
FPKM:2.37 TPM:1.87
1534 A_BomoMG_comp17114_c0_seq1
495bp
 PREDICTED:_peripheral_plasma_membrane_protein_CASK-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001953 P negative regulation of cell-matrix adhesion
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005604 C basement membrane
GO:0005634 C nucleus
GO:0005652 C nuclear lamina
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0010839 P negative regulation of keratinocyte proliferation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016323 C basolateral plasma membrane
GO:0016363 C nuclear matrix
GO:0016740 F transferase activity
GO:0031982 C vesicle
GO:0042043 F neurexin family protein binding
GO:0045202 C synapse
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0061045 P negative regulation of wound healing
GO:0070509 P calcium ion import
GO:0090280 P positive regulation of calcium ion import
GO:0090288 P negative regulation of cellular response to growth factor stimulus
FPKM:1.82 TPM:1.43
1535 A_BomoMG_comp17114_c1_seq1
338bp
 hypothetical_protein_KGM_01743_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005954 C calcium- and calmodulin-dependent protein kinase complex
GO:0006468 P protein phosphorylation
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0007298 P border follicle cell migration
GO:0007615 P anesthesia-resistant memory
GO:0007616 P long-term memory
GO:0007628 P adult walking behavior
GO:0008049 P male courtship behavior
GO:0008344 P adult locomotory behavior
GO:0008360 P regulation of cell shape
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0016020 C membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019233 P sensory perception of pain
GO:0031594 C neuromuscular junction
GO:0040011 P locomotion
GO:0040012 P regulation of locomotion
GO:0042043 F neurexin family protein binding
GO:0046331 P lateral inhibition
GO:0046928 P regulation of neurotransmitter secretion
GO:0048488 P synaptic vesicle endocytosis
GO:0061174 C type I terminal bouton
GO:0072375 P medium-term memory
GO:1900073 P regulation of neuromuscular synaptic transmission
GO:1900244 P positive regulation of synaptic vesicle endocytosis
GO:2000331 P regulation of terminal button organization
FPKM:3.12 TPM:2.47
1536 A_BomoMG_comp17115_c0_seq1
368bp
 PREDICTED:_ribonuclease_P_protein_subunit_rpr2_[Papilio_xuthus]
GO:0004526 F ribonuclease P activity
GO:0005634 C nucleus
GO:0005655 C nucleolar ribonuclease P complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:0.00 TPM:0.00
1537 A_BomoMG_comp17115_c0_seq2
407bp
 PREDICTED:_ribonuclease_P_protein_subunit_rpr2_[Papilio_xuthus]
GO:0004526 F ribonuclease P activity
GO:0005634 C nucleus
GO:0005655 C nucleolar ribonuclease P complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:2.15 TPM:1.70
1538 A_BomoMG_comp17117_c0_seq1
367bp
 hypothetical_protein,_conserved_[Eimeria_mitis]
FPKM:2.37 TPM:1.87
1539 A_BomoMG_comp17118_c0_seq1
262bp
 PREDICTED:_uncharacterized_protein_LOC101739668_isoform_X4_[Bombyx_mori]
FPKM:0.97 TPM:0.77
1540 A_BomoMG_comp17119_c0_seq1
299bp
 PREDICTED:_ELMO_domain-containing_protein_2_[Amyelois_transitella]
FPKM:3.43 TPM:2.71
1541 A_BomoMG_comp17122_c0_seq1
365bp
 hypothetical_protein_RR46_07769_[Papilio_xuthus]
FPKM:2.39 TPM:1.89
1542 A_BomoMG_comp171239_c0_seq1
265bp
FPKM:2.21 TPM:1.75
1543 A_BomoMG_comp17123_c0_seq1
311bp
 PREDICTED:_nucleolar_GTP-binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
FPKM:3.18 TPM:2.51
1544 A_BomoMG_comp17124_c0_seq1
445bp
FPKM:2.75 TPM:2.17
1545 A_BomoMG_comp17124_c1_seq1
223bp
FPKM:3.91 TPM:3.09
1546 A_BomoMG_comp17125_c0_seq1
300bp
 UvrB,_YAD/RRR-motif-containing_domain_containing_protein,_partial_[Enterobacter_cloacae_str._Hanford]
FPKM:1.95 TPM:1.54
1547 A_BomoMG_comp17126_c0_seq1
252bp
FPKM:3.91 TPM:3.09
1548 A_BomoMG_comp17127_c0_seq1
287bp
FPKM:1.07 TPM:0.84
1549 A_BomoMG_comp17129_c0_seq1
403bp
 transposase_[Attacus_atlas]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:2.76 TPM:2.18
1550 A_BomoMG_comp17129_c1_seq1
376bp
 transposase,_partial_[Cadra_cautella]
FPKM:1.46 TPM:1.16
1551 A_BomoMG_comp17131_c0_seq1
435bp
 PREDICTED:_hikaru_genki_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0030154 P cell differentiation
GO:0043025 C neuronal cell body
GO:0043083 C synaptic cleft
FPKM:2.03 TPM:1.60
1552 A_BomoMG_comp17131_c0_seq2
243bp
 PREDICTED:_hikaru_genki_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008039 P synaptic target recognition
GO:0030154 P cell differentiation
GO:0043025 C neuronal cell body
GO:0043083 C synaptic cleft
FPKM:1.67 TPM:1.32
1553 A_BomoMG_comp17132_c0_seq1
342bp
 pro-phenol_oxidase_[Bombyx_mandarina]
GO:0004497 F monooxygenase activity
GO:0004503 F tyrosinase activity
GO:0005576 C extracellular region
GO:0006583 P melanin biosynthetic process from tyrosine
GO:0006952 P defense response
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0042438 P melanin biosynthetic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.91 TPM:1.51
1554 A_BomoMG_comp171331_c0_seq1
696bp
 PREDICTED:_cholinesterase_2-like_isoform_X1_[Bombyx_mori]
FPKM:2.57 TPM:2.03
1555 A_BomoMG_comp17133_c0_seq1
378bp
FPKM:2.09 TPM:1.65
1556 A_BomoMG_comp17134_c0_seq1
321bp
 iron_ABC_transporter_permease_[Clostridiaceae_bacterium_GM1]
FPKM:3.00 TPM:2.37
1557 A_BomoMG_comp17135_c0_seq1
250bp
 scolexin_precursor_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
FPKM:2.90 TPM:2.29
1558 A_BomoMG_comp17136_c0_seq1
229bp
 predicted_protein_[Physcomitrella_patens]
FPKM:0.91 TPM:0.72
1559 A_BomoMG_comp17137_c0_seq1
635bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_A-kinase_anchor_protein_13_[Bombyx_mori]
GO:0004691 F cAMP-dependent protein kinase activity
GO:0004871 F obsolete signal transducer activity
GO:0005078 F MAP-kinase scaffold activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007507 P heart development
GO:0010611 P regulation of cardiac muscle hypertrophy
GO:0016020 C membrane
GO:0017048 F small GTPase binding
GO:0030864 C cortical actin cytoskeleton
GO:0032947 F molecular adaptor activity
GO:0035023 P regulation of Rho protein signal transduction
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0043065 P positive regulation of apoptotic process
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043547 P positive regulation of GTPase activity
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051018 F protein kinase A binding
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051168 P nuclear export
GO:0055007 P cardiac muscle cell differentiation
GO:0060297 P regulation of sarcomere organization
GO:0060348 P bone development
GO:0071875 P adrenergic receptor signaling pathway
GO:0086023 P adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process
GO:1900169 P regulation of glucocorticoid mediated signaling pathway
FPKM:1.90 TPM:1.50
1560 A_BomoMG_comp171395_c0_seq1
682bp
FPKM:2.71 TPM:2.14
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