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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6001 A_BomoFB_comp12313_c0_seq1
2983bp
 PREDICTED:_probable_aconitate_hydratase,_mitochondrial_[Papilio_xuthus]
GO:0003994 F aconitate hydratase activity
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006099 P tricarboxylic acid cycle
GO:0006101 P citrate metabolic process
GO:0008152 P metabolic process
GO:0016829 F lyase activity
GO:0043209 C myelin sheath
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
FPKM:128.48 TPM:140.78
6002 A_BomoFB_comp123141_c0_seq1
1997bp
 PREDICTED:_uncharacterized_protein_LOC101745796_[Bombyx_mori]
FPKM:2.64 TPM:2.90
6003 A_BomoFB_comp123189_c0_seq1
385bp
FPKM:0.81 TPM:0.88
6004 A_BomoFB_comp123203_c0_seq1
2495bp
 integrin_alpha-PS3-like_precursor_[Bombyx_mori]
GO:0001555 P oocyte growth
GO:0003344 P pericardium morphogenesis
GO:0004872 F signaling receptor activity
GO:0005055 F laminin receptor activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006909 P phagocytosis
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007391 P dorsal closure
GO:0007411 P axon guidance
GO:0007424 P open tracheal system development
GO:0007431 P salivary gland development
GO:0007494 P midgut development
GO:0007507 P heart development
GO:0007508 P larval heart development
GO:0007610 P behavior
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007614 P short-term memory
GO:0008305 C integrin complex
GO:0008355 P olfactory learning
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016340 P calcium-dependent cell-matrix adhesion
GO:0016477 P cell migration
GO:0030154 P cell differentiation
GO:0030336 P negative regulation of cell migration
GO:0033627 P cell adhesion mediated by integrin
GO:0035001 P dorsal trunk growth, open tracheal system
GO:0040011 P locomotion
GO:0042060 P wound healing
GO:0043277 P apoptotic cell clearance
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046982 F protein heterodimerization activity
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0050839 F cell adhesion molecule binding
FPKM:2.00 TPM:2.19
6005 A_BomoFB_comp12320_c0_seq1
2210bp
 PREDICTED:_digestive_cysteine_proteinase_1_[Papilio_xuthus]
GO:0004197 F cysteine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008234 F cysteine-type peptidase activity
GO:0016049 P cell growth
GO:0030435 P sporulation resulting in formation of a cellular spore
GO:0031288 P sorocarp morphogenesis
GO:0031410 C cytoplasmic vesicle
GO:0044351 P macropinocytosis
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0072659 P protein localization to plasma membrane
GO:1903665 P negative regulation of asexual reproduction
GO:1903669 P positive regulation of chemorepellent activity
FPKM:153.40 TPM:168.09
6006 A_BomoFB_comp123227_c0_seq1
983bp
FPKM:2.51 TPM:2.75
6007 A_BomoFB_comp123265_c0_seq1
350bp
FPKM:1.95 TPM:2.13
6008 A_BomoFB_comp123273_c0_seq1
417bp
 hypothetical_protein_G5I_10658_[Acromyrmex_echinatior]
FPKM:1.62 TPM:1.78
6009 A_BomoFB_comp123300_c0_seq1
508bp
 PREDICTED:_ribonuclease_P_protein_subunit_p40-like_[Amyelois_transitella]
FPKM:3.01 TPM:3.29
6010 A_BomoFB_comp123326_c0_seq1
359bp
FPKM:4.00 TPM:4.38
6011 A_BomoFB_comp123348_c0_seq1
1493bp
 PREDICTED:_transmembrane_protein_198_[Papilio_machaon]
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0012506 C vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0016055 P Wnt signaling pathway
GO:0031410 C cytoplasmic vesicle
FPKM:2.65 TPM:2.91
6012 A_BomoFB_comp123355_c0_seq1
2396bp
 PREDICTED:_SET_and_MYND_domain-containing_protein_4_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
FPKM:2.89 TPM:3.17
6013 A_BomoFB_comp123381_c0_seq1
322bp
FPKM:6.21 TPM:6.81
6014 A_BomoFB_comp123443_c0_seq1
1292bp
FPKM:1.52 TPM:1.66
6015 A_BomoFB_comp123483_c0_seq1
1461bp
 olfactory_receptor_[Bombyx_mori]
FPKM:1.57 TPM:1.72
6016 A_BomoFB_comp123485_c0_seq1
468bp
 hypothetical_protein_RR46_04255_[Papilio_xuthus]
FPKM:3.05 TPM:3.34
6017 A_BomoFB_comp1234_c0_seq1
642bp
 PREDICTED:_formin-like_protein_CG32138_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0016043 P cellular component organization
GO:0017048 F small GTPase binding
GO:0030036 P actin cytoskeleton organization
GO:0048812 P neuron projection morphogenesis
FPKM:1.77 TPM:1.94
6018 A_BomoFB_comp123531_c0_seq1
1433bp
 PREDICTED:_jmjC_domain-containing_histone_demethylation_protein_1_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
FPKM:2.87 TPM:3.14
6019 A_BomoFB_comp123563_c0_seq1
365bp
FPKM:2.98 TPM:3.26
6020 A_BomoFB_comp123565_c0_seq1
649bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_rho_guanine_nucleotide_exchange_factor_11_[Bombyx_mori]
GO:0000910 P cytokinesis
GO:0001558 P regulation of cell growth
GO:0001664 F G protein-coupled receptor binding
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006928 P movement of cell or subcellular component
GO:0006941 P striated muscle contraction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007266 P Rho protein signal transduction
GO:0016020 C membrane
GO:0030010 P establishment of cell polarity
GO:0030036 P actin cytoskeleton organization
GO:0035023 P regulation of Rho protein signal transduction
GO:0043065 P positive regulation of apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:2.80 TPM:3.06
6021 A_BomoFB_comp123567_c0_seq1
496bp
FPKM:2.08 TPM:2.28
6022 A_BomoFB_comp123572_c0_seq1
845bp
 Huntingtin_[Papilio_xuthus]
FPKM:2.79 TPM:3.06
6023 A_BomoFB_comp123624_c0_seq1
1533bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_glutamyl-tRNA(Gln)_amidotransferase_subunit_A,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0016874 F ligase activity
GO:0016884 F carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0030956 C glutamyl-tRNA(Gln) amidotransferase complex
GO:0032543 P mitochondrial translation
GO:0050567 F glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
GO:0070681 P glutaminyl-tRNAGln biosynthesis via transamidation
FPKM:2.37 TPM:2.60
6024 A_BomoFB_comp123634_c0_seq1
274bp
 hypothetical_protein_VOLCADRAFT_62202_[Volvox_carteri_f._nagariensis]
FPKM:3.49 TPM:3.82
6025 A_BomoFB_comp123673_c0_seq1
655bp
FPKM:1.61 TPM:1.76
6026 A_BomoFB_comp123701_c0_seq1
532bp
 PREDICTED:_uncharacterized_protein_LOC105842252_[Bombyx_mori]
FPKM:1.24 TPM:1.36
6027 A_BomoFB_comp123714_c0_seq1
759bp
 PREDICTED:_uncharacterized_protein_LOC106120248_[Papilio_xuthus]
FPKM:1.98 TPM:2.17
6028 A_BomoFB_comp123740_c0_seq1
246bp
 PREDICTED:_fibronectin_type-III_domain-containing_protein_3a_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001669 C acrosomal vesicle
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007286 P spermatid development
GO:0009566 P fertilization
GO:0012506 C vesicle membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
GO:0031410 C cytoplasmic vesicle
GO:0044822 F RNA binding
GO:0060009 P Sertoli cell development
FPKM:8.85 TPM:9.70
6029 A_BomoFB_comp123779_c0_seq1
1350bp
 putative_growth_hormone_regulated_TBC_protein_1_[Danaus_plexippus]
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0090630 P activation of GTPase activity
FPKM:2.74 TPM:3.01
6030 A_BomoFB_comp12378_c0_seq1
358bp
 Uncharacterized_protein_OBRU01_01903_[Operophtera_brumata]
FPKM:203.37 TPM:222.84
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