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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5971 A_BomoFB_comp12252_c0_seq1
1332bp
 cyclic_AMP-regulated_protein_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0019899 F enzyme binding
GO:0050832 P defense response to fungus
GO:0070062 C extracellular exosome
FPKM:113.92 TPM:124.83
5972 A_BomoFB_comp122534_c0_seq1
405bp
 PREDICTED:_splicing_factor,_arginine/serine-rich_15_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0043175 F RNA polymerase core enzyme binding
FPKM:3.42 TPM:3.75
5973 A_BomoFB_comp122538_c0_seq1
963bp
 PREDICTED:_uncharacterized_protein_LOC101742912_[Bombyx_mori]
FPKM:2.85 TPM:3.13
5974 A_BomoFB_comp122548_c0_seq1
789bp
FPKM:1.79 TPM:1.96
5975 A_BomoFB_comp122576_c0_seq1
248bp
FPKM:1.57 TPM:1.72
5976 A_BomoFB_comp122600_c0_seq1
438bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:4.90 TPM:5.36
5977 A_BomoFB_comp122625_c0_seq1
300bp
 PREDICTED:_uncharacterized_protein_LOC101746620_[Bombyx_mori]
FPKM:5.96 TPM:6.53
5978 A_BomoFB_comp122655_c0_seq1
227bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
5979 A_BomoFB_comp122677_c0_seq1
491bp
 DUF305_domain-containing_protein_[Gemmatimonas_aurantiaca]
FPKM:4.76 TPM:5.21
5980 A_BomoFB_comp12267_c0_seq1
677bp
 putative_cuticle_protein_precursor_[Bombyx_mori]
FPKM:113.20 TPM:124.03
5981 A_BomoFB_comp1226_c0_seq1
334bp
 PREDICTED:_chromosome_transmission_fidelity_protein_18_homolog_[Papilio_xuthus]
FPKM:2.15 TPM:2.35
5982 A_BomoFB_comp122753_c0_seq1
526bp
FPKM:3.17 TPM:3.47
5983 A_BomoFB_comp122774_c0_seq1
655bp
 PREDICTED:_ribosomal_protein_S6_kinase,_90_kDa_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002224 P toll-like receptor signaling pathway
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019901 F protein kinase binding
GO:0032496 P response to lipopolysaccharide
GO:0035556 P intracellular signal transduction
GO:0043027 F cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:3.68 TPM:4.03
5984 A_BomoFB_comp122814_c0_seq1
952bp
FPKM:2.47 TPM:2.71
5985 A_BomoFB_comp122841_c0_seq1
762bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:1.88 TPM:2.05
5986 A_BomoFB_comp122845_c0_seq1
280bp
FPKM:1.10 TPM:1.20
5987 A_BomoFB_comp12286_c0_seq1
2361bp
 moderately_methionine_rich_hexamerin_precursor_[Hyalophora_cecropia]
GO:0045735 F nutrient reservoir activity
FPKM:143.96 TPM:157.74
5988 A_BomoFB_comp12287_c0_seq1
459bp
 H+_transporting_ATP_synthase_subunit_g_[Bombyx_mori]
GO:0000276 C mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005753 C mitochondrial proton-transporting ATP synthase complex
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
FPKM:170.91 TPM:187.26
5989 A_BomoFB_comp1228_c0_seq1
325bp
FPKM:1.52 TPM:1.67
5990 A_BomoFB_comp122_c0_seq1
278bp
 PREDICTED:_uncharacterized_protein_LOC105841398_isoform_X3_[Bombyx_mori]
FPKM:1.68 TPM:1.84
5991 A_BomoFB_comp122_c1_seq1
424bp
 PREDICTED:_uncharacterized_protein_LOC105841398_isoform_X3_[Bombyx_mori]
FPKM:1.13 TPM:1.23
5992 A_BomoFB_comp123000_c0_seq1
447bp
 PREDICTED:_myotubularin-related_protein_5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0006470 P protein dephosphorylation
GO:0007283 P spermatogenesis
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0016021 C integral component of membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0019208 F phosphatase regulator activity
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
FPKM:3.91 TPM:4.28
5993 A_BomoFB_comp123032_c0_seq1
781bp
 diguanylate_phosphodiesterase_[Burkholderia_ginsengisoli]
FPKM:1.00 TPM:1.09
5994 A_BomoFB_comp123068_c0_seq1
700bp
FPKM:2.10 TPM:2.30
5995 A_BomoFB_comp12306_c0_seq1
2085bp
 ubiquitin-conjugating_enzyme_E2-17_kDa_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0001745 P compound eye morphogenesis
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005875 C microtubule associated complex
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007140 P male meiotic nuclear division
GO:0007286 P spermatid development
GO:0008054 P anaphase-promoting complex-dependent catabolic process
GO:0016322 P neuron remodeling
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0030718 P germ-line stem cell population maintenance
GO:0031625 F ubiquitin protein ligase binding
GO:0031647 P regulation of protein stability
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045676 P regulation of R7 cell differentiation
GO:0048132 P female germ-line stem cell asymmetric division
GO:0048477 P oogenesis
GO:0051276 P chromosome organization
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
FPKM:73.62 TPM:80.66
5996 A_BomoFB_comp123084_c0_seq1
344bp
 PREDICTED:_uncharacterized_protein_LOC101736185,_partial_[Bombyx_mori]
FPKM:4.03 TPM:4.42
5997 A_BomoFB_comp123099_c0_seq1
2370bp
 PREDICTED:_zinc_finger_protein_Xfin-like_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.36 TPM:2.58
5998 A_BomoFB_comp123109_c0_seq1
1662bp
 cytochrome_P450_CYP4G25_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006694 P steroid biosynthetic process
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019233 P sensory perception of pain
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.39 TPM:2.61
5999 A_BomoFB_comp12311_c0_seq1
496bp
 PREDICTED:_cytochrome_b-c1_complex_subunit_6,_mitochondrial-like_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005750 C mitochondrial respiratory chain complex III
GO:0006122 P mitochondrial electron transport, ubiquinol to cytochrome c
GO:0008121 F ubiquinol-cytochrome-c reductase activity
GO:0016020 C membrane
GO:0032403 F protein-containing complex binding
GO:0051291 P protein heterooligomerization
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
GO:1902600 P proton transmembrane transport
FPKM:142.05 TPM:155.64
6000 A_BomoFB_comp123124_c0_seq1
591bp
 hypothetical_protein_AD94_02513_[Klebsiella_pneumoniae_MGH_68]
FPKM:3.19 TPM:3.50
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