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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5701 A_BomoFB_comp118541_c0_seq1
539bp
FPKM:3.20 TPM:3.51
5702 A_BomoFB_comp118549_c0_seq1
479bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_lysosomal-trafficking_regulator_[Papilio_xuthus]
FPKM:5.32 TPM:5.83
5703 A_BomoFB_comp118574_c0_seq1
1605bp
 abdominal_A_isoform_L_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
FPKM:4.05 TPM:4.43
5704 A_BomoFB_comp118595_c0_seq1
357bp
 unknown_unsecreted_protein_[Papilio_xuthus]
FPKM:0.93 TPM:1.02
5705 A_BomoFB_comp1185_c0_seq1
289bp
 PREDICTED:_solute_carrier_family_22_member_21-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005887 C integral component of plasma membrane
GO:0015747 P urate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:0090416 F nicotinate transmembrane transporter activity
GO:2001142 P nicotinate transport
FPKM:1.51 TPM:1.66
5706 A_BomoFB_comp118619_c0_seq1
1077bp
 PREDICTED:_zinc_finger_FYVE_domain-containing_protein_26_homolog_isoform_X1_[Bombyx_mori]
GO:0046872 F metal ion binding
FPKM:3.04 TPM:3.33
5707 A_BomoFB_comp11864_c0_seq1
1149bp
 signal_sequence_receptor_beta_subunit_precursor_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006613 P cotranslational protein targeting to membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:108.86 TPM:119.28
5708 A_BomoFB_comp118708_c0_seq1
356bp
FPKM:0.63 TPM:0.69
5709 A_BomoFB_comp11882_c0_seq1
1047bp
 PREDICTED:_tyrosine-protein_phosphatase_Lar_isoform_X1_[Plutella_xylostella]
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0007283 P spermatogenesis
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008045 P motor neuron axon guidance
GO:0008201 F heparin binding
GO:0008360 P regulation of cell shape
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0031290 P retinal ganglion cell axon guidance
GO:0032093 F SAM domain binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045467 P R7 cell development
GO:0048477 P oogenesis
GO:0048675 P axon extension
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0051124 P synaptic assembly at neuromuscular junction
GO:1903386 P negative regulation of homophilic cell adhesion
FPKM:129.56 TPM:141.96
5710 A_BomoFB_comp118850_c0_seq1
433bp
 PREDICTED:_importin-11_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006610 P ribosomal protein import into nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0042991 P obsolete transcription factor import into nucleus
FPKM:2.39 TPM:2.62
5711 A_BomoFB_comp1188_c0_seq1
416bp
FPKM:0.93 TPM:1.02
5712 A_BomoFB_comp118_c0_seq1
206bp
FPKM:0.00 TPM:0.00
5713 A_BomoFB_comp119072_c0_seq1
249bp
FPKM:3.09 TPM:3.39
5714 A_BomoFB_comp119131_c0_seq1
220bp
nef_attachable_protein_[Aster_yellows_phytoplasma]
FPKM:0.00 TPM:0.00
5715 A_BomoFB_comp119190_c0_seq1
1345bp
 PREDICTED:_protein_spire_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0007015 P actin filament organization
GO:0007275 P multicellular organism development
GO:0007304 P chorion-containing eggshell formation
GO:0007315 P pole plasm assembly
GO:0007316 P pole plasm RNA localization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030029 P actin filament-based process
GO:0030036 P actin cytoskeleton organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0030717 P oocyte karyosome formation
GO:0031410 C cytoplasmic vesicle
GO:0045010 P actin nucleation
GO:0045451 P pole plasm oskar mRNA localization
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0051493 P regulation of cytoskeleton organization
GO:0051639 P actin filament network formation
FPKM:2.38 TPM:2.61
5716 A_BomoFB_comp119239_c0_seq1
2229bp
 PREDICTED:_cleavage_and_polyadenylation_specificity_factor_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0017022 F myosin binding
GO:0022008 P neurogenesis
FPKM:2.68 TPM:2.94
5717 A_BomoFB_comp11928_c0_seq1
1865bp
 PREDICTED:_zinc_finger_protein_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:94.16 TPM:103.17
5718 A_BomoFB_comp11929_c0_seq1
897bp
 translocon-associated_protein_gamma_isoform_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:168.56 TPM:184.69
5719 A_BomoFB_comp119417_c0_seq1
736bp
FPKM:2.45 TPM:2.69
5720 A_BomoFB_comp11943_c0_seq1
230bp
FPKM:1.02 TPM:1.11
5721 A_BomoFB_comp119514_c0_seq1
286bp
FPKM:4.14 TPM:4.54
5722 A_BomoFB_comp119622_c0_seq1
355bp
 hypothetical_protein_AW07_03286_[Candidatus_Accumulibacter_sp._SK-11]
FPKM:3.78 TPM:4.14
5723 A_BomoFB_comp119673_c0_seq1
456bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_Dbp45A_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:3.38 TPM:3.70
5724 A_BomoFB_comp1197_c0_seq1
206bp
 PREDICTED:_uncharacterized_protein_LOC105841862_[Bombyx_mori]
FPKM:3.18 TPM:3.48
5725 A_BomoFB_comp119812_c0_seq1
402bp
FPKM:3.96 TPM:4.34
5726 A_BomoFB_comp119847_c0_seq1
370bp
 estrogen_receptor_alpha_[Oryzias_javanicus]
FPKM:2.32 TPM:2.54
5727 A_BomoFB_comp1198_c0_seq1
332bp
 PREDICTED:_ankyrin_repeat_domain-containing_protein_50_isoform_X2_[Papilio_xuthus]
FPKM:1.81 TPM:1.99
5728 A_BomoFB_comp119_c0_seq1
262bp
 PREDICTED:_uncharacterized_protein_LOC105842505_[Bombyx_mori]
FPKM:0.66 TPM:0.72
5729 A_BomoFB_comp11_c0_seq1
280bp
FPKM:0.55 TPM:0.60
5730 A_BomoFB_comp120035_c0_seq1
1074bp
 PREDICTED:_retinol_dehydrogenase_12-like_[Papilio_machaon]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008152 P metabolic process
GO:0009644 P response to high light intensity
GO:0010842 P retina layer formation
GO:0016491 F oxidoreductase activity
GO:0042462 P eye photoreceptor cell development
GO:0042572 P retinol metabolic process
GO:0052650 F NADP-retinol dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.50 TPM:2.74
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