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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5731 A_BomoFB_comp120054_c0_seq1
359bp
 PREDICTED:_rho_GTPase-activating_protein_6_[Bombyx_mori]
FPKM:4.00 TPM:4.38
5732 A_BomoFB_comp120056_c0_seq1
917bp
 PREDICTED:_transport_and_Golgi_organization_protein_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0007030 P Golgi organization
GO:0009306 P protein secretion
FPKM:3.18 TPM:3.49
5733 A_BomoFB_comp120059_c0_seq1
302bp
 molecular_chaperone_DnaJ_[Bartonella_grahamii]
FPKM:3.19 TPM:3.49
5734 A_BomoFB_comp120072_c0_seq1
564bp
FPKM:1.99 TPM:2.19
5735 A_BomoFB_comp120080_c0_seq1
369bp
 PTS_fructose_transporter_subunit_IIA_[Desulfovibrio_aminophilus]
FPKM:4.08 TPM:4.47
5736 A_BomoFB_comp120095_c0_seq1
1289bp
 PREDICTED:_rho_guanine_nucleotide_exchange_factor_10_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:2.70 TPM:2.96
5737 A_BomoFB_comp120101_c0_seq1
295bp
 DNA_starvation/stationary_phase_protection_protein_[Streptomyces_ossamyceticus]
FPKM:1.44 TPM:1.57
5738 A_BomoFB_comp120102_c0_seq1
526bp
FPKM:3.17 TPM:3.47
5739 A_BomoFB_comp120110_c0_seq1
821bp
 PREDICTED:_WASH_complex_subunit_FAM21_[Papilio_xuthus]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0031901 C early endosome membrane
GO:0042147 P retrograde transport, endosome to Golgi
GO:0071203 C WASH complex
FPKM:3.49 TPM:3.82
5740 A_BomoFB_comp120117_c0_seq1
499bp
FPKM:2.92 TPM:3.20
5741 A_BomoFB_comp120120_c0_seq1
844bp
 PREDICTED:_uncharacterized_protein_LOC106136529_[Amyelois_transitella]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
FPKM:3.45 TPM:3.78
5742 A_BomoFB_comp120128_c0_seq1
774bp
FPKM:3.40 TPM:3.72
5743 A_BomoFB_comp120131_c0_seq1
653bp
FPKM:2.54 TPM:2.78
5744 A_BomoFB_comp120144_c0_seq1
514bp
FPKM:3.28 TPM:3.59
5745 A_BomoFB_comp120147_c0_seq1
593bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_isoform_X2_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:2.25 TPM:2.47
5746 A_BomoFB_comp120154_c0_seq1
445bp
 PREDICTED:_uncharacterized_protein_LOC101744153_[Bombyx_mori]
FPKM:2.28 TPM:2.50
5747 A_BomoFB_comp120169_c0_seq1
404bp
 PREDICTED:_ATP-binding_cassette_sub-family_A_member_3-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
FPKM:3.93 TPM:4.30
5748 A_BomoFB_comp120171_c0_seq1
608bp
FPKM:3.07 TPM:3.36
5749 A_BomoFB_comp120177_c0_seq1
341bp
FPKM:4.11 TPM:4.50
5750 A_BomoFB_comp120181_c0_seq1
822bp
 PREDICTED:_inositol_hexakisphosphate_kinase_2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000827 F inositol-1,3,4,5,6-pentakisphosphate kinase activity
GO:0000828 F inositol hexakisphosphate kinase activity
GO:0000829 F inositol heptakisphosphate kinase activity
GO:0000831 F inositol hexakisphosphate 6-kinase activity
GO:0000832 F inositol hexakisphosphate 5-kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
GO:0043647 P inositol phosphate metabolic process
GO:0046488 P phosphatidylinositol metabolic process
GO:0052723 F inositol hexakisphosphate 1-kinase activity
GO:0052724 F inositol hexakisphosphate 3-kinase activity
GO:0052836 F inositol 5-diphosphate pentakisphosphate 5-kinase activity
GO:0052839 F inositol diphosphate tetrakisphosphate kinase activity
FPKM:3.06 TPM:3.35
5751 A_BomoFB_comp120190_c0_seq1
324bp
FPKM:4.59 TPM:5.03
5752 A_BomoFB_comp120198_c0_seq1
879bp
 PREDICTED:_dedicator_of_cytokinesis_protein_1_isoform_X3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006909 P phagocytosis
GO:0006911 P phagocytosis, engulfment
GO:0006915 P apoptotic process
GO:0007010 P cytoskeleton organization
GO:0007165 P signal transduction
GO:0007229 P integrin-mediated signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007596 P blood coagulation
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0017124 F SH3 domain binding
GO:0032045 C guanyl-nucleotide exchange factor complex
GO:0038096 P Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043547 P positive regulation of GTPase activity
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
FPKM:2.65 TPM:2.91
5753 A_BomoFB_comp120202_c0_seq1
451bp
FPKM:2.63 TPM:2.88
5754 A_BomoFB_comp120233_c0_seq1
534bp
 PREDICTED:_DNA-directed_RNA_polymerase_I_subunit_RPA2_isoform_X1_[Amyelois_transitella]
GO:0001054 F RNA polymerase I activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0016049 P cell growth
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0022008 P neurogenesis
GO:0032549 F ribonucleoside binding
GO:0045793 P positive regulation of cell size
GO:0046872 F metal ion binding
FPKM:3.09 TPM:3.39
5755 A_BomoFB_comp120234_c0_seq1
437bp
 NB-ARC_[Penicillium_roqueforti_FM164]
FPKM:2.56 TPM:2.81
5756 A_BomoFB_comp120235_c0_seq1
539bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:4.73 TPM:5.18
5757 A_BomoFB_comp120244_c0_seq1
337bp
 hypothetical_protein_HETIRDRAFT_476959_[Heterobasidion_irregulare_TC_32-1]
FPKM:3.16 TPM:3.46
5758 A_BomoFB_comp120245_c0_seq1
698bp
 PREDICTED:_exocyst_complex_component_7_[Bombyx_mori]
GO:0000145 C exocyst
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0007269 P neurotransmitter secretion
GO:0008013 F beta-catenin binding
GO:0015031 P protein transport
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0098793 C presynapse
FPKM:3.80 TPM:4.16
5759 A_BomoFB_comp120255_c0_seq1
841bp
 putative_stromal_antigen_[Operophtera_brumata]
FPKM:2.81 TPM:3.07
5760 A_BomoFB_comp120260_c0_seq1
875bp
 PREDICTED:_uncharacterized_protein_LOC106110612_[Papilio_polytes]
FPKM:3.14 TPM:3.44
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