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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5611 A_BomoFB_comp116321_c0_seq1
739bp
 PREDICTED:_uncharacterized_protein_LOC101740446_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006414 P translational elongation
GO:0008150 P biological_process
GO:0043231 C intracellular membrane-bounded organelle
FPKM:4.00 TPM:4.39
5612 A_BomoFB_comp116322_c0_seq1
1438bp
 PREDICTED:_poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006342 P heterochromatin assembly
GO:0006909 P phagocytosis
GO:0009408 P response to heat
GO:0016787 F hydrolase activity
GO:0030576 P Cajal body organization
GO:0035065 P regulation of histone acetylation
GO:0036099 P female germ-line stem cell population maintenance
GO:0043484 P regulation of RNA splicing
GO:0051457 P maintenance of protein location in nucleus
FPKM:2.64 TPM:2.89
5613 A_BomoFB_comp116339_c0_seq1
1589bp
 aminopeptidase_N_precursor_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0009926 P auxin polar transport
GO:0010013 F N-1-naphthylphthalamic acid binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031090 C organelle membrane
GO:0042277 F peptide binding
GO:0043171 P peptide catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
FPKM:2.86 TPM:3.13
5614 A_BomoFB_comp116355_c0_seq1
637bp
 PREDICTED:_liprin-beta-1_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005925 C focal adhesion
GO:0008150 P biological_process
FPKM:2.87 TPM:3.14
5615 A_BomoFB_comp116365_c0_seq1
294bp
 hypothetical_protein_RR46_03784_[Papilio_xuthus]
FPKM:1.45 TPM:1.59
5616 A_BomoFB_comp116385_c0_seq1
940bp
FPKM:2.30 TPM:2.51
5617 A_BomoFB_comp116403_c0_seq1
240bp
 PREDICTED:_tudor_domain-containing_protein_7_isoform_X2_[Bombyx_mori]
FPKM:8.74 TPM:9.57
5618 A_BomoFB_comp11641_c0_seq1
742bp
 cytochrome_c_oxidase_subunit_Va_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005751 C mitochondrial respiratory chain complex IV
GO:0005811 C lipid droplet
GO:0006123 P mitochondrial electron transport, cytochrome c to oxygen
GO:0007406 P negative regulation of neuroblast proliferation
GO:0016020 C membrane
GO:0045787 P positive regulation of cell cycle
GO:0046872 F metal ion binding
GO:1902600 P proton transmembrane transport
FPKM:167.06 TPM:183.05
5619 A_BomoFB_comp116427_c0_seq1
325bp
 PREDICTED:_Hermansky-Pudlak_syndrome_1_protein_homolog_[Bombyx_mori]
FPKM:6.08 TPM:6.67
5620 A_BomoFB_comp116434_c0_seq1
496bp
 PREDICTED:_helicase_domino,_partial_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000812 C Swr1 complex
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0016568 P chromatin organization
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1990405 F protein antigen binding
FPKM:4.68 TPM:5.13
5621 A_BomoFB_comp116454_c0_seq1
943bp
 PREDICTED:_protein_crumbs_[Bombyx_mori]
GO:0001738 P morphogenesis of a polarized epithelium
GO:0001745 P compound eye morphogenesis
GO:0002009 P morphogenesis of an epithelium
GO:0005080 F protein kinase C binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0005918 C septate junction
GO:0007043 P cell-cell junction assembly
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007424 P open tracheal system development
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007443 P Malpighian tubule morphogenesis
GO:0008104 P protein localization
GO:0008284 P positive regulation of cell population proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016028 C rhabdomere
GO:0016324 C apical plasma membrane
GO:0016327 C apicolateral plasma membrane
GO:0016332 P establishment or maintenance of polarity of embryonic epithelium
GO:0016334 P establishment or maintenance of polarity of follicular epithelium
GO:0030154 P cell differentiation
GO:0030507 F spectrin binding
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032880 P regulation of protein localization
GO:0033157 P regulation of intracellular protein transport
GO:0034332 P adherens junction organization
GO:0035002 P liquid clearance, open tracheal system
GO:0035003 C subapical complex
GO:0035088 P establishment or maintenance of apical/basal cell polarity
GO:0035090 P maintenance of apical/basal cell polarity
GO:0035239 P tube morphogenesis
GO:0035330 P regulation of hippo signaling
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0042327 P positive regulation of phosphorylation
GO:0045186 P zonula adherens assembly
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0045198 P establishment of epithelial cell apical/basal polarity
GO:0045218 P zonula adherens maintenance
GO:0045494 P photoreceptor cell maintenance
GO:0045570 P regulation of imaginal disc growth
GO:0045746 P negative regulation of Notch signaling pathway
GO:0046621 P negative regulation of organ growth
GO:0046664 P dorsal closure, amnioserosa morphology change
GO:0048477 P oogenesis
GO:0050821 P protein stabilization
GO:0051642 P centrosome localization
GO:0061024 P membrane organization
GO:0061336 P cell morphogenesis involved in Malpighian tubule morphogenesis
GO:0061541 P rhabdomere morphogenesis
GO:0098813 P nuclear chromosome segregation
FPKM:3.36 TPM:3.68
5622 A_BomoFB_comp11645_c0_seq1
600bp
 PREDICTED:_uncharacterized_protein_LOC106714088_[Papilio_machaon]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005746 C mitochondrial respirasome
GO:0006091 P generation of precursor metabolites and energy
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1902600 P proton transmembrane transport
FPKM:222.84 TPM:244.17
5623 A_BomoFB_comp116472_c0_seq1
1761bp
 PREDICTED:_midasin_isoform_X1_[Bombyx_mori]
FPKM:2.75 TPM:3.02
5624 A_BomoFB_comp1164_c0_seq1
238bp
 GL21127_[Drosophila_persimilis]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010172 P embryonic body morphogenesis
GO:0016787 F hydrolase activity
GO:0040022 P feminization of hermaphroditic germ-line
GO:0044822 F RNA binding
GO:0048589 P developmental growth
FPKM:2.70 TPM:2.96
5625 A_BomoFB_comp116529_c0_seq1
879bp
FPKM:2.26 TPM:2.48
5626 A_BomoFB_comp116588_c0_seq1
1331bp
 PREDICTED:_ER_membrane_protein_complex_subunit_1_[Papilio_xuthus]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0072546 C EMC complex
FPKM:3.45 TPM:3.78
5627 A_BomoFB_comp116599_c0_seq1
508bp
FPKM:4.01 TPM:4.39
5628 A_BomoFB_comp11660_c0_seq1
1318bp
 PREDICTED:_dihydropteridine_reductase_[Papilio_machaon]
GO:0004155 F 6,7-dihydropteridine reductase activity
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006729 P tetrahydrobiopterin biosynthetic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
FPKM:144.79 TPM:158.65
5629 A_BomoFB_comp116640_c0_seq1
607bp
FPKM:2.69 TPM:2.95
5630 A_BomoFB_comp116647_c0_seq1
330bp
 hypothetical_protein_RR46_13991_[Papilio_xuthus]
FPKM:5.51 TPM:6.04
5631 A_BomoFB_comp11664_c0_seq1
1596bp
 fibroinase_precursor_[Bombyx_mori]
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
FPKM:166.03 TPM:181.92
5632 A_BomoFB_comp116652_c0_seq1
241bp
FPKM:2.58 TPM:2.83
5633 A_BomoFB_comp116672_c0_seq1
323bp
FPKM:3.86 TPM:4.22
5634 A_BomoFB_comp116683_c0_seq1
206bp
FPKM:4.77 TPM:5.22
5635 A_BomoFB_comp116684_c0_seq1
474bp
FPKM:2.80 TPM:3.07
5636 A_BomoFB_comp116685_c0_seq1
622bp
FPKM:2.60 TPM:2.85
5637 A_BomoFB_comp11670_c0_seq1
536bp
 Similar_to_CG4692_[Heliconius_melpomene]
GO:0000276 C mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739 C mitochondrion
GO:0005811 C lipid droplet
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0031966 C mitochondrial membrane
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046331 P lateral inhibition
FPKM:239.45 TPM:262.37
5638 A_BomoFB_comp116725_c0_seq1
300bp
FPKM:0.92 TPM:1.01
5639 A_BomoFB_comp11672_c0_seq1
809bp
 H+_transporting_ATP_synthase_O_subunit_isoform_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005756 C mitochondrial proton-transporting ATP synthase, central stalk
GO:0005811 C lipid droplet
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0042776 P mitochondrial ATP synthesis coupled proton transport
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
FPKM:203.82 TPM:223.32
5640 A_BomoFB_comp116738_c0_seq1
1631bp
 PREDICTED:_dyslexia-associated_protein_KIAA0319_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0070062 C extracellular exosome
FPKM:2.85 TPM:3.12
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