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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5461 A_BomoFB_comp114369_c0_seq1
1916bp
 PREDICTED:_zinc_finger_protein_Xfin-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.13 TPM:2.33
5462 A_BomoFB_comp114384_c0_seq1
373bp
 PREDICTED:_integrator_complex_subunit_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
FPKM:5.14 TPM:5.63
5463 A_BomoFB_comp114388_c0_seq1
504bp
 hypothetical_protein_MELLADRAFT_84463_[Melampsora_larici-populina_98AG31]
FPKM:3.38 TPM:3.71
5464 A_BomoFB_comp114396_c0_seq1
1727bp
 PREDICTED:_zinc_finger_protein_729_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000278 P mitotic cell cycle
GO:0000976 F transcription cis-regulatory region binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051567 P histone H3-K9 methylation
GO:0070491 F DNA-binding transcription factor binding
FPKM:2.74 TPM:3.01
5465 A_BomoFB_comp1143_c0_seq1
202bp
 hypothetical_protein_[Streptomyces_aurantiacus]
FPKM:3.47 TPM:3.81
5466 A_BomoFB_comp114404_c0_seq1
691bp
FPKM:1.92 TPM:2.11
5467 A_BomoFB_comp114410_c0_seq1
1019bp
 PREDICTED:_ras-related_protein_Rab-21_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005925 C focal adhesion
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008089 P anterograde axonal transport
GO:0008152 P metabolic process
GO:0009898 C cytoplasmic side of plasma membrane
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017157 P regulation of exocytosis
GO:0019003 F GDP binding
GO:0030516 P regulation of axon extension
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0032154 C cleavage furrow
GO:0032580 C Golgi cisterna membrane
GO:0043005 C neuron projection
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0050775 P positive regulation of dendrite morphogenesis
GO:0070062 C extracellular exosome
GO:0098559 C cytoplasmic side of early endosome membrane
GO:1904115 C axon cytoplasm
GO:2000643 P positive regulation of early endosome to late endosome transport
FPKM:3.51 TPM:3.84
5468 A_BomoFB_comp114421_c0_seq1
780bp
FPKM:3.36 TPM:3.69
5469 A_BomoFB_comp114423_c0_seq1
827bp
 homothorax,_isoform_F_[Danaus_plexippus]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
FPKM:3.03 TPM:3.33
5470 A_BomoFB_comp114424_c0_seq1
657bp
 PREDICTED:_zinc_finger_protein_77-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.86 TPM:3.14
5471 A_BomoFB_comp114435_c0_seq1
1185bp
 PREDICTED:_gamma-taxilin_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0010564 P regulation of cell cycle process
GO:0016020 C membrane
GO:0019905 F syntaxin binding
GO:0030500 P regulation of bone mineralization
GO:0031965 C nuclear membrane
GO:0046982 F protein heterodimerization activity
GO:0051726 P regulation of cell cycle
FPKM:3.31 TPM:3.62
5472 A_BomoFB_comp114436_c0_seq1
386bp
FPKM:4.01 TPM:4.39
5473 A_BomoFB_comp114443_c0_seq1
421bp
 unnamed_protein_product_[Phytomonas_sp._isolate_Hart1]
FPKM:3.65 TPM:4.00
5474 A_BomoFB_comp114472_c0_seq1
2137bp
 PREDICTED:_uncharacterized_protein_LOC101745407_isoform_X4_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:2.81 TPM:3.07
5475 A_BomoFB_comp114480_c0_seq1
210bp
 half_transporter_ABCB_family_[Phytophthora_sojae]
FPKM:0.00 TPM:0.00
5476 A_BomoFB_comp114481_c0_seq1
747bp
 hypothetical_protein_[Devosia_limi]
FPKM:1.44 TPM:1.58
5477 A_BomoFB_comp114485_c0_seq1
513bp
FPKM:1.97 TPM:2.16
5478 A_BomoFB_comp114491_c0_seq1
3998bp
 PREDICTED:_phospholipase_C_gamma_isoform_X1_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001726 C ruffle
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005168 F neurotrophin TRKA receptor binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0008081 F phosphoric diester hydrolase activity
GO:0008180 C COP9 signalosome
GO:0009395 P phospholipid catabolic process
GO:0010634 P positive regulation of epithelial cell migration
GO:0016042 P lipid catabolic process
GO:0016477 P cell migration
GO:0016787 F hydrolase activity
GO:0019722 P calcium-mediated signaling
GO:0019901 F protein kinase binding
GO:0030027 C lamellipodium
GO:0030971 F receptor tyrosine kinase binding
GO:0035254 F glutamate receptor binding
GO:0035556 P intracellular signal transduction
GO:0042995 C cell projection
GO:0043536 P positive regulation of blood vessel endothelial cell migration
GO:0045766 P positive regulation of angiogenesis
GO:0046872 F metal ion binding
GO:0050852 P T cell receptor signaling pathway
GO:0051281 P positive regulation of release of sequestered calcium ion into cytosol
GO:0071364 P cellular response to epidermal growth factor stimulus
FPKM:2.65 TPM:2.90
5479 A_BomoFB_comp114493_c0_seq1
1375bp
 PREDICTED:_uncharacterized_protein_LOC106131368_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.10 TPM:2.30
5480 A_BomoFB_comp114494_c0_seq1
2242bp
 hypothetical_protein_KGM_12467_[Danaus_plexippus]
FPKM:2.50 TPM:2.74
5481 A_BomoFB_comp114507_c0_seq1
792bp
 PREDICTED:_5'-3'_exoribonuclease_1_isoform_X2_[Bombyx_mori]
FPKM:3.03 TPM:3.32
5482 A_BomoFB_comp114522_c0_seq1
364bp
 PREDICTED:_zinc_finger_protein_271-like_isoform_X2_[Bombyx_mori]
FPKM:5.09 TPM:5.58
5483 A_BomoFB_comp114530_c0_seq1
1704bp
 PREDICTED:_organic_cation_transporter_protein-like_[Amyelois_transitella]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:3.18 TPM:3.48
5484 A_BomoFB_comp114534_c0_seq1
1859bp
 PREDICTED:_dedicator_of_cytokinesis_protein_7_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007264 P small GTPase mediated signal transduction
GO:0007596 P blood coagulation
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
FPKM:2.98 TPM:3.27
5485 A_BomoFB_comp114544_c0_seq1
771bp
FPKM:1.94 TPM:2.12
5486 A_BomoFB_comp114545_c0_seq1
1196bp
FPKM:1.93 TPM:2.11
5487 A_BomoFB_comp114551_c0_seq1
905bp
FPKM:1.20 TPM:1.32
5488 A_BomoFB_comp114557_c0_seq1
362bp
 broad-complex_A-NZ2_isoform_[Bombyx_mori]
FPKM:3.03 TPM:3.32
5489 A_BomoFB_comp114562_c0_seq1
3350bp
 PREDICTED:_zinc_finger_protein_Xfin-like_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.23 TPM:2.44
5490 A_BomoFB_comp114566_c0_seq1
897bp
 protein_star_[Bombyx_mori]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007421 P stomatogastric nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016318 P ommatidial rotation
GO:0035225 P determination of genital disc primordium
GO:0038004 P epidermal growth factor receptor ligand maturation
GO:0042051 P compound eye photoreceptor development
GO:0042058 P regulation of epidermal growth factor receptor signaling pathway
GO:0045467 P R7 cell development
GO:0046667 P compound eye retinal cell programmed cell death
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0048149 P behavioral response to ethanol
GO:0048477 P oogenesis
GO:0048865 P stem cell fate commitment
GO:0050896 P response to stimulus
GO:0061331 P epithelial cell proliferation involved in Malpighian tubule morphogenesis
GO:0097038 C perinuclear endoplasmic reticulum
FPKM:3.27 TPM:3.58
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