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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5431 A_BomoFB_comp114110_c0_seq1
214bp
 uncharacterized_LOC101743290_precursor_[Bombyx_mori]
FPKM:8.08 TPM:8.85
5432 A_BomoFB_comp114112_c0_seq1
324bp
FPKM:1.15 TPM:1.26
5433 A_BomoFB_comp114116_c0_seq1
607bp
FPKM:2.56 TPM:2.81
5434 A_BomoFB_comp11411_c0_seq1
2008bp
 cystathionine_gamma-lyase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004123 F cystathionine gamma-lyase activity
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0008652 P cellular amino acid biosynthetic process
GO:0016829 F lyase activity
GO:0018272 P protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine
GO:0019344 P cysteine biosynthetic process
GO:0030170 F pyridoxal phosphate binding
GO:0043066 P negative regulation of apoptotic process
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044524 P protein sulfhydration
GO:0044540 F L-cystine L-cysteine-lyase (deaminating)
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0070814 P hydrogen sulfide biosynthetic process
GO:0080146 F L-cysteine desulfhydrase activity
FPKM:175.58 TPM:192.39
5435 A_BomoFB_comp114131_c0_seq1
1195bp
 PREDICTED:_cell_cycle_checkpoint_control_protein_RAD9A_[Amyelois_transitella]
GO:0000075 P cell cycle checkpoint signaling
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0030896 C checkpoint clamp complex
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0042826 F histone deacetylase binding
GO:0071479 P cellular response to ionizing radiation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1902231 P positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage
FPKM:1.66 TPM:1.82
5436 A_BomoFB_comp114133_c0_seq1
1657bp
 scaffold_protein_salvador_[Bombyx_mori]
GO:0001942 P hair follicle development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0030216 P keratinocyte differentiation
GO:0035329 P hippo signaling
GO:0043065 P positive regulation of apoptotic process
GO:0045600 P positive regulation of fat cell differentiation
GO:0046620 P regulation of organ growth
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0050821 P protein stabilization
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060044 P negative regulation of cardiac muscle cell proliferation
GO:0060412 P ventricular septum morphogenesis
GO:0060487 P lung epithelial cell differentiation
GO:0060575 P intestinal epithelial cell differentiation
GO:2000036 P regulation of stem cell population maintenance
FPKM:2.73 TPM:2.99
5437 A_BomoFB_comp114146_c0_seq1
472bp
FPKM:2.82 TPM:3.09
5438 A_BomoFB_comp114152_c0_seq1
343bp
 PREDICTED:_exportin-6_[Bombyx_mori]
FPKM:6.43 TPM:7.04
5439 A_BomoFB_comp114161_c0_seq1
1662bp
 PREDICTED:_trafficking_protein_particle_complex_subunit_8_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0030242 P autophagy of peroxisome
GO:0031410 C cytoplasmic vesicle
GO:0032258 P cytoplasm to vacuole transport by the Cvt pathway
GO:0034497 P protein localization to phagophore assembly site
GO:0044804 P autophagy of nucleus
GO:1990072 C TRAPPIII protein complex
FPKM:2.83 TPM:3.10
5440 A_BomoFB_comp114180_c0_seq1
1734bp
 Sugar_transporter,_partial_[Operophtera_brumata]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:2.56 TPM:2.80
5441 A_BomoFB_comp114187_c0_seq1
267bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_isoform_X3_[Bombyx_mori]
FPKM:9.38 TPM:10.28
5442 A_BomoFB_comp114189_c0_seq1
1479bp
 hypothetical_protein_KGM_15110_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.73 TPM:4.09
5443 A_BomoFB_comp114214_c0_seq1
492bp
 Uncharacterized_protein_C12orf41-like_[Papilio_machaon]
FPKM:2.99 TPM:3.27
5444 A_BomoFB_comp114226_c0_seq1
6192bp
 PREDICTED:_pecanex-like_protein_1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007029 P endoplasmic reticulum organization
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0046331 P lateral inhibition
FPKM:2.13 TPM:2.34
5445 A_BomoFB_comp114229_c0_seq1
816bp
 PREDICTED:_uncharacterized_protein_LOC106129887_[Amyelois_transitella]
FPKM:1.97 TPM:2.16
5446 A_BomoFB_comp114230_c0_seq1
1142bp
 PREDICTED:_zinc_finger_protein_628_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.09 TPM:2.30
5447 A_BomoFB_comp114237_c0_seq1
503bp
 PREDICTED:_transmembrane_and_coiled-coil_domains_protein_2_isoform_X4_[Bombyx_mori]
FPKM:4.58 TPM:5.02
5448 A_BomoFB_comp114241_c0_seq1
261bp
 transcription-repair_coupling_factor_[Oribacterium_sp._FC2011]
FPKM:2.67 TPM:2.93
5449 A_BomoFB_comp114248_c0_seq1
1105bp
 PREDICTED:_uncharacterized_protein_LOC101745993_[Bombyx_mori]
FPKM:2.12 TPM:2.32
5450 A_BomoFB_comp114253_c0_seq1
582bp
 PREDICTED:_eukaryotic_translation_initiation_factor_4E_type_2-like,_partial_[Bombyx_mori]
FPKM:3.67 TPM:4.03
5451 A_BomoFB_comp114281_c0_seq1
269bp
FPKM:9.18 TPM:10.06
5452 A_BomoFB_comp114283_c0_seq1
2484bp
 PREDICTED:_transducin_beta-like_protein_3_isoform_X1_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
FPKM:2.31 TPM:2.53
5453 A_BomoFB_comp114284_c0_seq1
305bp
FPKM:0.88 TPM:0.97
5454 A_BomoFB_comp114289_c0_seq1
766bp
 PREDICTED:_zinc_finger_protein_OZF_isoform_X2_[Bombyx_mori]
FPKM:2.42 TPM:2.65
5455 A_BomoFB_comp114300_c0_seq1
318bp
 phenylalanyl-tRNA_synthetase_beta_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0009328 C phenylalanine-tRNA ligase complex
GO:0016874 F ligase activity
FPKM:5.99 TPM:6.57
5456 A_BomoFB_comp114329_c0_seq1
536bp
FPKM:2.61 TPM:2.86
5457 A_BomoFB_comp114334_c0_seq1
1150bp
FPKM:0.73 TPM:0.80
5458 A_BomoFB_comp114344_c0_seq1
1101bp
 PREDICTED:_bifunctional_3'-phosphoadenosine_5'-phosphosulfate_synthase_isoform_X1_[Bombyx_mori]
GO:0000103 P sulfate assimilation
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004020 F adenylylsulfate kinase activity
GO:0004781 F sulfate adenylyltransferase (ATP) activity
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:3.25 TPM:3.56
5459 A_BomoFB_comp11434_c0_seq1
1101bp
 peptidylprolyl_isomerase_B_precursor_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005925 C focal adhesion
GO:0006457 P protein folding
GO:0016020 C membrane
GO:0016853 F isomerase activity
GO:0032403 F protein-containing complex binding
GO:0032991 C protein-containing complex
GO:0034663 C endoplasmic reticulum chaperone complex
GO:0040018 P positive regulation of multicellular organism growth
GO:0042277 F peptide binding
GO:0042470 C melanosome
GO:0044794 P positive regulation by host of viral process
GO:0044822 F RNA binding
GO:0044829 P positive regulation by host of viral genome replication
GO:0048471 C perinuclear region of cytoplasm
GO:0050821 P protein stabilization
GO:0060348 P bone development
GO:0061077 P chaperone-mediated protein folding
GO:0070062 C extracellular exosome
GO:0070063 F RNA polymerase binding
FPKM:152.72 TPM:167.34
5460 A_BomoFB_comp114360_c0_seq1
939bp
 phosphate_starvation_inducible_protein,_partial_[uncultured_virus]
FPKM:2.37 TPM:2.60
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