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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5311 A_BomoFB_comp111149_c0_seq1
627bp
FPKM:2.81 TPM:3.08
5312 A_BomoFB_comp1111829_c0_seq1
205bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1_[Bombyx_mori]
FPKM:3.25 TPM:3.56
5313 A_BomoFB_comp111190_c0_seq1
1098bp
 multidrug_ABC_transporter_[Streptococcus_pseudopneumoniae]
FPKM:2.02 TPM:2.21
5314 A_BomoFB_comp1111_c0_seq1
306bp
FPKM:2.19 TPM:2.40
5315 A_BomoFB_comp111259_c0_seq1
662bp
FPKM:2.95 TPM:3.23
5316 A_BomoFB_comp1112726_c0_seq1
207bp
 multidrug_transporter_AcrB_[Vitellibacter_sp._D-24]
FPKM:1.55 TPM:1.70
5317 A_BomoFB_comp1112_c0_seq1
387bp
 PREDICTED:_disheveled-associated_activator_of_morphogenesis_1_isoform_X2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016043 P cellular component organization
GO:0017048 F small GTPase binding
GO:0030036 P actin cytoskeleton organization
GO:0042802 F identical protein binding
FPKM:2.13 TPM:2.33
5318 A_BomoFB_comp1113035_c0_seq1
245bp
FPKM:0.82 TPM:0.89
5319 A_BomoFB_comp111322_c0_seq1
1558bp
 FKBP6_BOMMO_RecName:_Full=Inactive_peptidyl-prolyl_cis-trans_isomerase_shutdown
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
GO:0051879 F Hsp90 protein binding
FPKM:3.83 TPM:4.20
5320 A_BomoFB_comp111329_c0_seq1
2069bp
 PREDICTED:_interference_hedgehog-like_[Papilio_xuthus]
GO:0007224 P smoothened signaling pathway
GO:0008201 F heparin binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042803 F protein homodimerization activity
GO:0097108 F hedgehog family protein binding
FPKM:3.60 TPM:3.94
5321 A_BomoFB_comp111357_c0_seq1
417bp
 PREDICTED:_protein_SHQ1_homolog_[Bombyx_mori]
FPKM:3.71 TPM:4.07
5322 A_BomoFB_comp111366_c0_seq1
552bp
 PREDICTED:_uncharacterized_protein_LOC106718181_[Papilio_machaon]
FPKM:3.68 TPM:4.03
5323 A_BomoFB_comp111421_c0_seq1
805bp
 PREDICTED:_leucine-rich_repeat-containing_protein_16A_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007015 P actin filament organization
GO:0007596 P blood coagulation
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0030027 C lamellipodium
GO:0030032 P lamellipodium assembly
GO:0030335 P positive regulation of cell migration
GO:0030838 P positive regulation of actin filament polymerization
GO:0031252 C cell leading edge
GO:0031529 P ruffle organization
GO:0031941 C filamentous actin
GO:0032403 F protein-containing complex binding
GO:0042995 C cell projection
GO:0044351 P macropinocytosis
GO:0044354 C macropinosome
GO:0046415 P urate metabolic process
GO:0051496 P positive regulation of stress fiber assembly
GO:0051638 P barbed-end actin filament uncapping
GO:0051639 P actin filament network formation
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1902745 P positive regulation of lamellipodium organization
GO:2000813 P negative regulation of barbed-end actin filament capping
FPKM:2.97 TPM:3.25
5324 A_BomoFB_comp1114_c0_seq1
202bp
 PREDICTED:_uncharacterized_protein_LOC106137189_isoform_X1_[Amyelois_transitella]
FPKM:5.21 TPM:5.71
5325 A_BomoFB_comp1115040_c0_seq1
223bp
FPKM:1.14 TPM:1.25
5326 A_BomoFB_comp111524_c0_seq1
626bp
 hypothetical_protein_KGM_19668_[Danaus_plexippus]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005675 C transcription factor TFIIH holo complex
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007512 P adult heart development
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008270 F zinc ion binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0021591 P ventricular system development
GO:0043066 P negative regulation of apoptotic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0051592 P response to calcium ion
FPKM:3.31 TPM:3.63
5327 A_BomoFB_comp1115308_c0_seq1
211bp
 PREDICTED:_NADPH_oxidase_5_[Bombyx_mori]
FPKM:1.43 TPM:1.57
5328 A_BomoFB_comp111546_c0_seq1
317bp
 hypothetical_protein_RR46_05468_[Papilio_xuthus]
FPKM:2.41 TPM:2.65
5329 A_BomoFB_comp1115_c0_seq1
364bp
 PREDICTED:_uncharacterized_protein_LOC101745877_isoform_X3_[Bombyx_mori]
FPKM:1.20 TPM:1.31
5330 A_BomoFB_comp111675_c0_seq1
697bp
FPKM:3.27 TPM:3.59
5331 A_BomoFB_comp1116_c0_seq1
252bp
 hypothetical_protein_SORBIDRAFT_03g041720_[Sorghum_bicolor]
FPKM:3.72 TPM:4.08
5332 A_BomoFB_comp111701_c0_seq1
1832bp
 PREDICTED:_beta-1,4-glucuronyltransferase_1_[Papilio_machaon]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0008532 F N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030311 P poly-N-acetyllactosamine biosynthetic process
GO:0035269 P protein O-linked mannosylation
GO:0046872 F metal ion binding
GO:0048747 P muscle cell development
FPKM:2.67 TPM:2.92
5333 A_BomoFB_comp111711_c0_seq1
625bp
 Protein_tantalus_[Operophtera_brumata]
FPKM:3.19 TPM:3.50
5334 A_BomoFB_comp11171_c0_seq1
1540bp
 superoxide_dismutase_[Cu-Zn]_[Bombyx_mori]
GO:0004784 F superoxide dismutase activity
GO:0005737 C cytoplasm
GO:0006801 P superoxide metabolic process
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0019430 P removal of superoxide radicals
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:128.19 TPM:140.46
5335 A_BomoFB_comp111721_c0_seq1
1021bp
 PREDICTED:_transformation/transcription_domain-associated_protein_[Bombyx_mori]
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
FPKM:2.53 TPM:2.77
5336 A_BomoFB_comp111752_c0_seq1
523bp
FPKM:3.03 TPM:3.32
5337 A_BomoFB_comp111798_c0_seq1
1601bp
 PREDICTED:_PDZ_domain-containing_protein_2-like_[Amyelois_transitella]
GO:0005576 C extracellular region
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005911 C cell-cell junction
GO:0007155 P cell adhesion
FPKM:3.18 TPM:3.48
5338 A_BomoFB_comp1117_c0_seq1
484bp
FPKM:1.44 TPM:1.58
5339 A_BomoFB_comp111821_c0_seq1
572bp
FPKM:2.23 TPM:2.45
5340 A_BomoFB_comp111822_c0_seq1
257bp
FPKM:2.10 TPM:2.30
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