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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5281 A_BomoFB_comp11066_c0_seq1
1915bp
 C-type_lectin_10_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0030246 F carbohydrate binding
FPKM:193.85 TPM:212.40
5282 A_BomoFB_comp110676_c0_seq1
856bp
 PREDICTED:_splicing_factor_U2af_38_kDa_subunit_isoform_X2_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0010906 P regulation of glucose metabolic process
GO:0046872 F metal ion binding
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
FPKM:2.82 TPM:3.09
5283 A_BomoFB_comp11067_c0_seq1
1796bp
 calreticulin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006457 P protein folding
GO:0008150 P biological_process
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
GO:0051082 F unfolded protein binding
FPKM:264.26 TPM:289.55
5284 A_BomoFB_comp11069_c0_seq1
777bp
 cytochrome_c_oxidase_polypeptide_IV_[Bombyx_mori]
GO:0004129 F cytochrome-c oxidase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:1902600 P proton transmembrane transport
FPKM:353.17 TPM:386.97
5285 A_BomoFB_comp110702_c0_seq1
215bp
 PREDICTED:_uncharacterized_mitochondrial_protein_AtMg00810-like_[Ziziphus_jujuba]
FPKM:3.96 TPM:4.34
5286 A_BomoFB_comp110714_c0_seq1
314bp
 serine_protease_inhibitor_33_precursor_[Bombyx_mori]
FPKM:1.65 TPM:1.80
5287 A_BomoFB_comp110730_c0_seq1
653bp
 PREDICTED:_fasciclin-1_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0031225 C anchored component of membrane
FPKM:1.96 TPM:2.15
5288 A_BomoFB_comp11075_c0_seq1
2580bp
 heat_shock_protein_83_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006950 P response to stress
GO:0051082 F unfolded protein binding
FPKM:285.80 TPM:313.15
5289 A_BomoFB_comp110766_c0_seq1
1093bp
 PREDICTED:_ankyrin_repeat_and_LEM_domain-containing_protein_2,_partial_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007084 P mitotic nuclear membrane reassembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0035307 P positive regulation of protein dephosphorylation
GO:0042326 P negative regulation of phosphorylation
GO:0051301 P cell division
GO:0051721 F protein phosphatase 2A binding
FPKM:3.28 TPM:3.60
5290 A_BomoFB_comp110767_c0_seq1
395bp
FPKM:3.33 TPM:3.64
5291 A_BomoFB_comp110780_c0_seq1
214bp
 AP-2_complex_subunit_beta_[Papilio_xuthus]
GO:0003279 P cardiac septum development
GO:0003281 P ventricular septum development
GO:0005515 F protein binding
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0007507 P heart development
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030118 C clathrin coat
GO:0030119 C AP-type membrane coat adaptor complex
GO:0030131 C clathrin adaptor complex
GO:0030276 F clathrin binding
GO:0032403 F protein-containing complex binding
GO:0035904 P aorta development
GO:0043231 C intracellular membrane-bounded organelle
GO:0048268 P clathrin coat assembly
GO:0060976 P coronary vasculature development
FPKM:14.82 TPM:16.23
5292 A_BomoFB_comp1107_c0_seq1
249bp
FPKM:2.32 TPM:2.54
5293 A_BomoFB_comp1108053_c0_seq1
310bp
 PREDICTED:_protein_patched_isoform_X2_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007224 P smoothened signaling pathway
GO:0008158 F hedgehog receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.27 TPM:1.39
5294 A_BomoFB_comp110826_c0_seq1
460bp
 PREDICTED:_uncharacterized_protein_LOC106138591_[Amyelois_transitella]
FPKM:3.72 TPM:4.08
5295 A_BomoFB_comp110827_c0_seq1
553bp
 PREDICTED:_uncharacterized_protein_LOC106136068_[Amyelois_transitella]
FPKM:3.52 TPM:3.86
5296 A_BomoFB_comp110857_c0_seq1
271bp
FPKM:3.00 TPM:3.28
5297 A_BomoFB_comp110872_c0_seq1
2544bp
 PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_isoform_X1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.41 TPM:2.65
5298 A_BomoFB_comp11087_c0_seq1
1451bp
 hydroxypyruvate_isomerase_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0008903 F hydroxypyruvate isomerase activity
GO:0016853 F isomerase activity
FPKM:183.11 TPM:200.64
5299 A_BomoFB_comp1108_c0_seq1
321bp
 hypothetical_protein_[Musa_acuminata]
FPKM:0.00 TPM:0.00
5300 A_BomoFB_comp110904_c0_seq1
601bp
 PREDICTED:_DNA-directed_RNA_polymerase_II_subunit_RPB1-like_[Bombyx_mori]
FPKM:3.12 TPM:3.42
5301 A_BomoFB_comp11090_c0_seq1
3713bp
 saposin-like_protein_[Bombyx_mori]
GO:0001664 F G protein-coupled receptor binding
GO:0002576 P platelet degranulation
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006687 P glycosphingolipid metabolic process
GO:0006869 P lipid transport
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0008047 F enzyme activator activity
GO:0008289 F lipid binding
GO:0010506 P regulation of autophagy
GO:0016021 C integral component of membrane
GO:0019216 P regulation of lipid metabolic process
GO:0043085 P positive regulation of catalytic activity
GO:0043202 C lysosomal lumen
GO:0043408 P regulation of MAPK cascade
GO:0043410 P positive regulation of MAPK cascade
GO:0048589 P developmental growth
GO:0060736 P prostate gland growth
GO:0060742 P epithelial cell differentiation involved in prostate gland development
GO:0070062 C extracellular exosome
GO:0071310 P cellular response to organic substance
GO:1903206 P negative regulation of hydrogen peroxide-induced cell death
FPKM:257.06 TPM:281.67
5302 A_BomoFB_comp110963_c0_seq1
436bp
 PREDICTED:_general_transcription_factor_IIH_subunit_4-like_[Plutella_xylostella]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
FPKM:4.50 TPM:4.94
5303 A_BomoFB_comp11097_c0_seq1
4537bp
 acidic_nucleoplasmic_DNA-binding_protein_1_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0009063 P cellular amino acid catabolic process
GO:0016829 F lyase activity
GO:0016853 F isomerase activity
GO:0044275 P cellular carbohydrate catabolic process
GO:0046872 F metal ion binding
GO:0050023 F L-fuconate dehydratase activity
FPKM:95.15 TPM:104.26
5304 A_BomoFB_comp111038_c0_seq1
577bp
 PREDICTED:_connector_enhancer_of_kinase_suppressor_of_ras_1_[Sturnus_vulgaris]
FPKM:3.44 TPM:3.77
5305 A_BomoFB_comp1110749_c0_seq1
244bp
 hypothetical_protein_[Vibrio_crassostreae]
FPKM:0.83 TPM:0.91
5306 A_BomoFB_comp11107_c0_seq1
503bp
 H+_transporting_ATP_synthase_subunit_e_[Bombyx_mori]
GO:0000276 C mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005753 C mitochondrial proton-transporting ATP synthase complex
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
FPKM:319.95 TPM:350.57
5307 A_BomoFB_comp1110902_c0_seq1
215bp
 PREDICTED:_uncharacterized_protein_LOC101742325_[Bombyx_mori]
FPKM:1.32 TPM:1.45
5308 A_BomoFB_comp11109_c0_seq1
1459bp
 heat_shock_protein_hsp21.4_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0009408 P response to heat
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0042802 F identical protein binding
GO:0043292 C contractile fiber
GO:0051016 P barbed-end actin filament capping
GO:0051693 P actin filament capping
FPKM:223.80 TPM:245.22
5309 A_BomoFB_comp111123_c0_seq1
532bp
 hypothetical_protein_cypCar_00024314_[Cyprinus_carpio]
FPKM:4.04 TPM:4.43
5310 A_BomoFB_comp111143_c0_seq1
287bp
FPKM:5.65 TPM:6.19
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