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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5251 A_BomoFB_comp110307_c0_seq1
449bp
 PREDICTED:_transport_and_Golgi_organization_protein_6-like_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.06 TPM:3.35
5252 A_BomoFB_comp110313_c0_seq1
1024bp
FPKM:3.29 TPM:3.61
5253 A_BomoFB_comp110319_c0_seq1
352bp
 PREDICTED:_protein_mahjong_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0016567 P protein ubiquitination
GO:0035212 P cell competition in a multicellular organism
FPKM:3.84 TPM:4.21
5254 A_BomoFB_comp1103257_c0_seq1
206bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101739343_[Bombyx_mori]
FPKM:3.18 TPM:3.48
5255 A_BomoFB_comp11033_c0_seq1
1728bp
 hypothetical_protein_[Schlesneria_paludicola]
FPKM:218.57 TPM:239.50
5256 A_BomoFB_comp110353_c0_seq1
935bp
FPKM:3.39 TPM:3.72
5257 A_BomoFB_comp110386_c0_seq1
2122bp
 PREDICTED:_probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X2_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006897 P endocytosis
GO:0007275 P multicellular organism development
GO:0007349 P cellularization
GO:0007601 P visual perception
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008354 P germ cell migration
GO:0008583 P mystery cell differentiation
GO:0009950 P dorsal/ventral axis specification
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030154 P cell differentiation
GO:0035192 P nuclear cortical migration
GO:0036459 F thiol-dependent deubiquitinase
GO:0045824 P negative regulation of innate immune response
GO:0045861 P negative regulation of proteolysis
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0050896 P response to stimulus
FPKM:3.00 TPM:3.28
5258 A_BomoFB_comp1103_c0_seq1
278bp
 embryonic_polarity_protein_dorsal_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001715 P ectodermal cell fate specification
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006952 P defense response
GO:0006954 P inflammatory response
GO:0006955 P immune response
GO:0006964 P positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0007275 P multicellular organism development
GO:0007369 P gastrulation
GO:0007398 P ectoderm development
GO:0007419 P ventral cord development
GO:0007498 P mesoderm development
GO:0007501 P mesodermal cell fate specification
GO:0007507 P heart development
GO:0008063 P Toll signaling pathway
GO:0008354 P germ cell migration
GO:0008358 P maternal determination of anterior/posterior axis, embryo
GO:0009950 P dorsal/ventral axis specification
GO:0009952 P anterior/posterior pattern specification
GO:0009953 P dorsal/ventral pattern formation
GO:0010004 P gastrulation involving germ band extension
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0016015 F morphogen activity
GO:0031594 C neuromuscular junction
GO:0033256 C I-kappaB/NF-kappaB complex
GO:0034097 P response to cytokine
GO:0035006 P melanization defense response
GO:0035206 P regulation of hemocyte proliferation
GO:0038061 P NIK/NF-kappaB signaling
GO:0042387 P plasmatocyte differentiation
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048935 P peripheral nervous system neuron development
GO:0070379 F high mobility group box 1 binding
GO:0070491 F DNA-binding transcription factor binding
FPKM:2.23 TPM:2.45
5259 A_BomoFB_comp110405_c0_seq1
581bp
FPKM:3.14 TPM:3.44
5260 A_BomoFB_comp110416_c0_seq1
398bp
 hypothetical_protein_Micbo1qcDRAFT_235413_[Microdochium_bolleyi]
FPKM:3.03 TPM:3.32
5261 A_BomoFB_comp110419_c0_seq1
1905bp
 PREDICTED:_F-box_only_protein_42_[Amyelois_transitella]
FPKM:2.40 TPM:2.63
5262 A_BomoFB_comp110421_c0_seq1
453bp
 PREDICTED:_SLIT-ROBO_Rho_GTPase-activating_protein_3-like,_partial_[Bombyx_mori]
FPKM:3.22 TPM:3.52
5263 A_BomoFB_comp110448_c0_seq1
383bp
FPKM:4.07 TPM:4.46
5264 A_BomoFB_comp110457_c0_seq1
337bp
 PREDICTED:_coagulation_factor_XI-like_[Larimichthys_crocea]
FPKM:0.35 TPM:0.38
5265 A_BomoFB_comp110458_c0_seq1
1219bp
FPKM:2.73 TPM:2.99
5266 A_BomoFB_comp110465_c0_seq1
243bp
FPKM:0.84 TPM:0.92
5267 A_BomoFB_comp1104_c0_seq1
578bp
FPKM:1.24 TPM:1.36
5268 A_BomoFB_comp110505_c0_seq1
822bp
 smoothened_[Danaus_plexippus]
GO:0001746 P Bolwig's organ morphogenesis
GO:0002385 P mucosal immune response
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005113 F patched binding
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007455 P eye-antennal disc morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017147 F Wnt-protein binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030707 P ovarian follicle cell development
GO:0035019 P somatic stem cell population maintenance
GO:0035567 P non-canonical Wnt signaling pathway
GO:0042813 F Wnt-activated receptor activity
GO:0042981 P regulation of apoptotic process
GO:0043025 C neuronal cell body
GO:0045746 P negative regulation of Notch signaling pathway
GO:0048099 P anterior/posterior lineage restriction, imaginal disc
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048592 P eye morphogenesis
GO:0060070 P canonical Wnt signaling pathway
GO:0090004 P positive regulation of protein localization to plasma membrane
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
FPKM:3.14 TPM:3.44
5269 A_BomoFB_comp110511_c0_seq1
708bp
 PREDICTED:_uncharacterized_protein_LOC101742101_[Bombyx_mori]
FPKM:3.52 TPM:3.85
5270 A_BomoFB_comp110512_c0_seq1
1108bp
 PREDICTED:_ELKS/Rab6-interacting/CAST_family_member_1-like_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0007252 P I-kappaB phosphorylation
GO:0007275 P multicellular organism development
GO:0008385 C IkappaB kinase complex
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030165 F PDZ domain binding
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042734 C presynaptic membrane
GO:0043522 F leucine zipper domain binding
GO:0045202 C synapse
GO:0048786 C presynaptic active zone
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
FPKM:2.76 TPM:3.02
5271 A_BomoFB_comp11055_c0_seq1
915bp
 Ommochrome-binding_protein_[Operophtera_brumata]
FPKM:299.27 TPM:327.92
5272 A_BomoFB_comp110562_c0_seq1
2011bp
 PREDICTED:_uncharacterized_protein_LOC101741500_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0032880 P regulation of protein localization
GO:0061024 P membrane organization
GO:0090630 P activation of GTPase activity
FPKM:3.12 TPM:3.42
5273 A_BomoFB_comp110565_c0_seq1
1275bp
 PREDICTED:_phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_A_[Papilio_polytes]
GO:0000506 C glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0008194 F UDP-glycosyltransferase activity
GO:0009893 P positive regulation of metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016254 P preassembly of GPI anchor in ER membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0017176 F phosphatidylinositol N-acetylglucosaminyltransferase activity
FPKM:1.94 TPM:2.12
5274 A_BomoFB_comp1105_c0_seq1
431bp
 PREDICTED:_zinc_finger_CCCH_domain-containing_protein_13_[Bombyx_mori]
FPKM:0.88 TPM:0.96
5275 A_BomoFB_comp110602_c0_seq1
695bp
 PREDICTED:_tRNA_(cytidine(32)-2'-O)-methyltransferase_non-catalytic_subunit_TRM732_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0030488 P tRNA methylation
FPKM:2.33 TPM:2.56
5276 A_BomoFB_comp110645_c0_seq1
775bp
FPKM:2.02 TPM:2.21
5277 A_BomoFB_comp110655_c0_seq1
862bp
 PREDICTED:_single-stranded_DNA-binding_protein_3_isoform_X1_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006461 P protein-containing complex assembly
GO:0008284 P positive regulation of cell population proliferation
GO:0021501 P prechordal plate formation
GO:0021547 P midbrain-hindbrain boundary initiation
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060322 P head development
GO:0060323 P head morphogenesis
GO:2000744 P positive regulation of anterior head development
FPKM:4.08 TPM:4.47
5278 A_BomoFB_comp1106593_c0_seq1
209bp
FPKM:1.49 TPM:1.63
5279 A_BomoFB_comp110660_c0_seq1
359bp
FPKM:3.69 TPM:4.05
5280 A_BomoFB_comp110669_c0_seq1
1056bp
 luciferin_4-monooxygenase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004497 F monooxygenase activity
GO:0005524 F ATP binding
GO:0005777 C peroxisome
GO:0008152 P metabolic process
GO:0008218 P bioluminescence
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0047077 F Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.11 TPM:2.32
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