SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5221 A_BomoFB_comp110003_c0_seq1
826bp
 sugar_ABC_transporter_permease_[Sphaerochaeta_globosa]
FPKM:2.53 TPM:2.78
5222 A_BomoFB_comp1100050_c0_seq1
212bp
 hypothetical_protein_DFA_10041_[Dictyostelium_fasciculatum]
FPKM:1.40 TPM:1.54
5223 A_BomoFB_comp110006_c0_seq1
604bp
 putative_peptidyl-tRNA_hydrolase_PTRHD1_[Operophtera_brumata]
GO:0004045 F aminoacyl-tRNA hydrolase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0070062 C extracellular exosome
FPKM:4.26 TPM:4.66
5224 A_BomoFB_comp110044_c0_seq1
326bp
 Uncharacterized_protein_OBRU01_21437_[Operophtera_brumata]
FPKM:6.04 TPM:6.62
5225 A_BomoFB_comp110050_c0_seq1
1130bp
 hypothetical_protein_RR48_10280_[Papilio_machaon]
FPKM:2.24 TPM:2.45
5226 A_BomoFB_comp110063_c0_seq1
1421bp
 PREDICTED:_uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:2.06 TPM:2.26
5227 A_BomoFB_comp110090_c0_seq1
634bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_ovochymase-2-like_[Bombyx_mori]
FPKM:3.61 TPM:3.96
5228 A_BomoFB_comp1100_c0_seq1
339bp
 PREDICTED:_PH_and_SEC7_domain-containing_protein_2_isoform_X3_[Bombyx_mori]
FPKM:1.15 TPM:1.26
5229 A_BomoFB_comp1100_c0_seq2
237bp
 PREDICTED:_PH_and_SEC7_domain-containing_protein_2_isoform_X3_[Bombyx_mori]
FPKM:2.44 TPM:2.68
5230 A_BomoFB_comp11010_c0_seq1
1333bp
 PREDICTED:_uncharacterized_protein_LOC101743420_[Bombyx_mori]
FPKM:194.36 TPM:212.96
5231 A_BomoFB_comp110122_c0_seq1
452bp
 putative_zinc_finger_protein_nocA_[Operophtera_brumata]
GO:0001752 P compound eye photoreceptor fate commitment
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0007424 P open tracheal system development
GO:0007430 P terminal branching, open tracheal system
GO:0008056 P ocellus development
GO:0008283 P cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0035214 P eye-antennal disc development
GO:0035218 P leg disc development
GO:0035220 P wing disc development
GO:0046872 F metal ion binding
FPKM:3.83 TPM:4.20
5232 A_BomoFB_comp110126_c0_seq1
278bp
FPKM:0.56 TPM:0.61
5233 A_BomoFB_comp110152_c0_seq1
1345bp
 PREDICTED:_UPF0489_protein_C5orf22_homolog_isoform_X2_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.99 TPM:3.28
5234 A_BomoFB_comp1101757_c0_seq1
218bp
 PREDICTED:_guanine_nucleotide-binding_protein_subunit_beta-2-like_[Bombyx_mori]
GO:0003924 F GTPase activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005834 C heterotrimeric G-protein complex
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007202 P activation of phospholipase C activity
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0016028 C rhabdomere
GO:0016056 P rhodopsin mediated signaling pathway
GO:0016059 P deactivation of rhodopsin mediated signaling
GO:0046982 F protein heterodimerization activity
GO:0050896 P response to stimulus
FPKM:1.25 TPM:1.37
5235 A_BomoFB_comp1101803_c0_seq1
285bp
 diaminopimelate_epimerase_[Legionella_norrlandica]
FPKM:1.05 TPM:1.15
5236 A_BomoFB_comp110184_c0_seq1
583bp
FPKM:1.22 TPM:1.34
5237 A_BomoFB_comp110197_c0_seq1
419bp
FPKM:3.22 TPM:3.53
5238 A_BomoFB_comp11019_c0_seq1
584bp
FPKM:2.17 TPM:2.37
5239 A_BomoFB_comp1101_c0_seq1
311bp
FPKM:0.00 TPM:0.00
5240 A_BomoFB_comp1102012_c0_seq1
211bp
FPKM:0.00 TPM:0.00
5241 A_BomoFB_comp110201_c0_seq1
2052bp
 PREDICTED:_tyrosine-protein_phosphatase_Lar_[Amyelois_transitella]
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0007283 P spermatogenesis
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008045 P motor neuron axon guidance
GO:0008201 F heparin binding
GO:0008360 P regulation of cell shape
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0031290 P retinal ganglion cell axon guidance
GO:0032093 F SAM domain binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045467 P R7 cell development
GO:0048477 P oogenesis
GO:0048675 P axon extension
GO:0048841 P regulation of axon extension involved in axon guidance
GO:0051124 P synaptic assembly at neuromuscular junction
GO:1903386 P negative regulation of homophilic cell adhesion
FPKM:2.82 TPM:3.09
5242 A_BomoFB_comp110231_c0_seq1
1039bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Amyelois_transitella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:3.23 TPM:3.54
5243 A_BomoFB_comp110233_c0_seq1
392bp
FPKM:0.78 TPM:0.85
5244 A_BomoFB_comp110251_c0_seq1
505bp
 PREDICTED:_DNA_replication_complex_GINS_protein_SLD5_[Amyelois_transitella]
GO:0000727 P double-strand break repair via break-induced replication
GO:0000811 C GINS complex
GO:0001833 P inner cell mass cell proliferation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0031298 C replication fork protection complex
GO:0032508 P DNA duplex unwinding
GO:0043138 F 3'-5' DNA helicase activity
FPKM:2.53 TPM:2.77
5245 A_BomoFB_comp110272_c0_seq1
811bp
FPKM:2.33 TPM:2.56
5246 A_BomoFB_comp110279_c0_seq1
846bp
 PREDICTED:_OTU_domain-containing_protein_7B-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0002376 P immune system process
GO:0002385 P mucosal immune response
GO:0003677 F DNA binding
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0032717 P negative regulation of interleukin-8 production
GO:0035871 P protein K11-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0043124 P negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071108 P protein K48-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1900181 P negative regulation of protein localization to nucleus
GO:1990380 F Lys48-specific deubiquitinase activity
FPKM:2.29 TPM:2.51
5247 A_BomoFB_comp11027_c0_seq1
1247bp
 PREDICTED:_torso-like_protein_[Bombyx_mori]
GO:0005122 F torso binding
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0008293 P torso signaling pathway
GO:0008595 P anterior/posterior axis specification, embryo
GO:0009880 P embryonic pattern specification
GO:0040018 P positive regulation of multicellular organism growth
FPKM:327.64 TPM:359.00
5248 A_BomoFB_comp110287_c0_seq1
498bp
 PREDICTED:_uncharacterized_protein_LOC101742145_[Bombyx_mori]
FPKM:3.10 TPM:3.40
5249 A_BomoFB_comp1102884_c0_seq1
219bp
 PREDICTED:_sterol_regulatory_element-binding_protein_cleavage-activating_protein_[Bombyx_mori]
FPKM:2.45 TPM:2.69
5250 A_BomoFB_comp110296_c0_seq1
930bp
 PREDICTED:_yemanuclein-alpha_[Plutella_xylostella]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0001940 C male pronucleus
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0007143 P female meiotic nuclear division
GO:0035042 P fertilization, exchange of chromosomal proteins
GO:0042585 C germinal vesicle
GO:0048477 P oogenesis
FPKM:2.76 TPM:3.03
previous next from show/35635

- SilkBase 1999-2023 -