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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5161 A_BomoFB_comp10948_c0_seq1
217bp
FPKM:38.15 TPM:41.81
5162 A_BomoFB_comp109501_c0_seq1
1174bp
 UDP-glycosyltransferase_UGT46A1_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0015020 F glucuronosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016758 F hexosyltransferase activity
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:2.52 TPM:2.76
5163 A_BomoFB_comp109503_c0_seq1
220bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:2.41 TPM:2.64
5164 A_BomoFB_comp109505_c0_seq1
1380bp
FPKM:2.90 TPM:3.18
5165 A_BomoFB_comp109507_c0_seq1
293bp
 hypothetical_protein_[Neptunomonas_antarctica]
FPKM:2.92 TPM:3.20
5166 A_BomoFB_comp109509_c0_seq1
578bp
FPKM:1.51 TPM:1.66
5167 A_BomoFB_comp109520_c0_seq1
718bp
 PREDICTED:_nuclear_pore_complex_protein_Nup205-like_[Papilio_machaon]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0044611 C nuclear pore inner ring
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:4.57 TPM:5.00
5168 A_BomoFB_comp109526_c0_seq1
391bp
FPKM:3.13 TPM:3.43
5169 A_BomoFB_comp109527_c0_seq1
377bp
 PREDICTED:_phosphorylase_b_kinase_gamma_catalytic_chain,_skeletal_muscle/heart_isoform_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004689 F phosphorylase kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005964 C phosphorylase kinase complex
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0050321 F tau-protein kinase activity
FPKM:4.75 TPM:5.21
5170 A_BomoFB_comp109529_c0_seq1
1906bp
 PREDICTED:_N6-adenosine-methyltransferase_70_kDa_subunit_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0001510 P RNA methylation
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006382 P adenosine to inosine editing
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008168 F methyltransferase activity
GO:0008173 F RNA methyltransferase activity
GO:0010467 P gene expression
GO:0016422 F mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0019827 P stem cell population maintenance
GO:0031053 P primary miRNA processing
GO:0032259 P methylation
GO:0036396 C RNA N6-methyladenosine methyltransferase complex
GO:0048511 P rhythmic process
GO:0061157 P mRNA destabilization
GO:0080009 P mRNA methylation
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990744 P primary miRNA methylation
FPKM:2.58 TPM:2.83
5171 A_BomoFB_comp109537_c0_seq1
465bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_ovochymase-2-like_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0007596 P blood coagulation
GO:0007599 P hemostasis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0050728 P negative regulation of inflammatory response
GO:0050819 P negative regulation of coagulation
GO:1903142 P positive regulation of establishment of endothelial barrier
FPKM:4.62 TPM:5.06
5172 A_BomoFB_comp109548_c0_seq1
1712bp
 hypothetical_protein_RR48_08303_[Papilio_machaon]
FPKM:2.59 TPM:2.84
5173 A_BomoFB_comp109558_c0_seq1
498bp
 PREDICTED:_serine-rich_adhesin_for_platelets-like_[Amyelois_transitella]
FPKM:2.59 TPM:2.83
5174 A_BomoFB_comp109561_c0_seq1
359bp
 PREDICTED:_G_patch_domain-containing_protein_8_[Austrofundulus_limnaeus]
FPKM:0.62 TPM:0.67
5175 A_BomoFB_comp109569_c0_seq1
415bp
 hypothetical_protein_Maq22A_c27860_[Methylobacterium_aquaticum]
FPKM:4.68 TPM:5.13
5176 A_BomoFB_comp1095_c0_seq1
247bp
FPKM:1.59 TPM:1.74
5177 A_BomoFB_comp109602_c0_seq1
676bp
FPKM:2.86 TPM:3.14
5178 A_BomoFB_comp109606_c0_seq1
2184bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2_isoform_X1_[Bombyx_mori]
GO:0005451 F monovalent cation:proton antiporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
GO:2001206 P positive regulation of osteoclast development
FPKM:3.20 TPM:3.51
5179 A_BomoFB_comp109613_c0_seq1
2914bp
 PREDICTED:_dorsal-ventral_patterning_protein_Sog_isoform_X1_[Bombyx_mori]
GO:0005518 F collagen binding
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007313 P maternal specification of dorsal/ventral axis, oocyte, soma encoded
GO:0007354 P zygotic determination of anterior/posterior axis, embryo
GO:0007362 P terminal region determination
GO:0007378 P amnioserosa formation
GO:0007398 P ectoderm development
GO:0008083 F growth factor activity
GO:0008293 P torso signaling pathway
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030509 P BMP signaling pathway
GO:0030510 P regulation of BMP signaling pathway
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0035271 P ring gland development
GO:0040008 P regulation of growth
GO:0061328 P posterior Malpighian tubule development
FPKM:2.47 TPM:2.70
5180 A_BomoFB_comp109615_c0_seq1
2239bp
 PREDICTED:_uncharacterized_protein_LOC101743413_isoform_X2_[Bombyx_mori]
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
FPKM:2.48 TPM:2.72
5181 A_BomoFB_comp10961_c0_seq1
746bp
 PREDICTED:_ribonuclease_UK114-like_[Amyelois_transitella]
GO:0001822 P kidney development
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005829 C cytosol
GO:0006449 P regulation of translational termination
GO:0007420 P brain development
GO:0016787 F hydrolase activity
GO:0016892 F endoribonuclease activity, producing 3'-phosphomonoesters
GO:0017148 P negative regulation of translation
GO:0030324 P lung development
GO:0033993 P response to lipid
GO:0036041 F long-chain fatty acid binding
GO:0042803 F protein homodimerization activity
GO:0043167 F ion binding
GO:0044822 F RNA binding
GO:0046914 F transition metal ion binding
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0070062 C extracellular exosome
GO:0070314 P G1 to G0 transition
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1902074 P response to salt
GO:1904012 F obsolete platinum binding
GO:1904013 F obsolete xenon atom binding
FPKM:342.03 TPM:374.77
5182 A_BomoFB_comp109623_c0_seq1
603bp
FPKM:2.84 TPM:3.12
5183 A_BomoFB_comp109635_c0_seq1
336bp
FPKM:1.41 TPM:1.55
5184 A_BomoFB_comp109638_c0_seq1
1509bp
 PREDICTED:_rho_guanine_nucleotide_exchange_factor_10_isoform_X3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0019894 F kinesin binding
GO:0022011 P myelination in peripheral nervous system
GO:0035023 P regulation of Rho protein signal transduction
GO:0051298 P centrosome duplication
GO:0051496 P positive regulation of stress fiber assembly
GO:0090307 P mitotic spindle assembly
GO:0090630 P activation of GTPase activity
FPKM:2.62 TPM:2.87
5185 A_BomoFB_comp109641_c0_seq1
1174bp
 putative_cysteinyl-tRNA_synthetase_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004817 F cysteine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006423 P cysteinyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:3.07 TPM:3.36
5186 A_BomoFB_comp109648_c0_seq1
561bp
FPKM:3.30 TPM:3.62
5187 A_BomoFB_comp109655_c0_seq1
231bp
 PREDICTED:_serrate_RNA_effector_molecule_homolog_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
FPKM:13.00 TPM:14.24
5188 A_BomoFB_comp109659_c0_seq1
1223bp
 Myosin-XVIIIa_[Papilio_xuthus]
FPKM:2.77 TPM:3.03
5189 A_BomoFB_comp10965_c1_seq1
1254bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_probable_enoyl-CoA_hydratase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004300 F enoyl-CoA hydratase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0016829 F lyase activity
FPKM:346.24 TPM:379.38
5190 A_BomoFB_comp1096908_c0_seq1
248bp
FPKM:0.00 TPM:0.00
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