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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4921 A_BomoFB_comp10696_c0_seq1
413bp
 ribosomal_protein_L37_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:961.84 TPM:1053.91
4922 A_BomoFB_comp10697_c0_seq1
830bp
 ribosomal_protein_L13_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:914.56 TPM:1002.10
4923 A_BomoFB_comp10698_c0_seq1
635bp
 ribosomal_protein_L12_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0045901 P positive regulation of translational elongation
GO:0070180 F large ribosomal subunit rRNA binding
FPKM:973.40 TPM:1066.57
4924 A_BomoFB_comp10698_c1_seq1
1150bp
FPKM:19.81 TPM:21.70
4925 A_BomoFB_comp10699_c0_seq1
4296bp
 cytochrome_b_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006122 P mitochondrial electron transport, ubiquinol to cytochrome c
GO:0008121 F ubiquinol-cytochrome-c reductase activity
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0022904 P respiratory electron transport chain
GO:0045275 C respiratory chain complex III
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
GO:1902600 P proton transmembrane transport
FPKM:221.10 TPM:242.27
4926 A_BomoFB_comp106_c0_seq1
226bp
 maltose_phosphorylase_[Danaus_plexippus]
FPKM:1.08 TPM:1.19
4927 A_BomoFB_comp10700_c0_seq1
1421bp
 Y-box_protein_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:713.23 TPM:781.50
4928 A_BomoFB_comp10704_c0_seq1
3166bp
 PREDICTED:_C-1-tetrahydrofolate_synthase,_cytoplasmic_isoform_X2_[Bombyx_mori]
GO:0000105 P histidine biosynthetic process
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004329 F formate-tetrahydrofolate ligase activity
GO:0004477 F methenyltetrahydrofolate cyclohydrolase activity
GO:0004488 F methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006730 P one-carbon metabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0009396 P folic acid-containing compound biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016787 F hydrolase activity
GO:0016874 F ligase activity
GO:0035999 P tetrahydrofolate interconversion
GO:0055114 P obsolete oxidation-reduction process
FPKM:773.42 TPM:847.45
4929 A_BomoFB_comp1070563_c0_seq1
208bp
FPKM:3.04 TPM:3.33
4930 A_BomoFB_comp10705_c0_seq1
12207bp
 PREDICTED:_collagen_alpha-2(IV)_chain_[Bombyx_mori]
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005587 C collagen type IV trimer
GO:0005604 C basement membrane
GO:0007391 P dorsal closure
GO:0035848 P oviduct morphogenesis
GO:0055013 P cardiac muscle cell development
FPKM:579.27 TPM:634.71
4931 A_BomoFB_comp1070777_c0_seq1
220bp
FPKM:2.41 TPM:2.64
4932 A_BomoFB_comp107077_c0_seq1
468bp
 hypothetical_protein_RR48_11658_[Papilio_machaon]
FPKM:3.24 TPM:3.55
4933 A_BomoFB_comp10707_c0_seq1
1571bp
 PREDICTED:_arginine_kinase_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004054 F arginine kinase activity
GO:0005524 F ATP binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016772 F transferase activity, transferring phosphorus-containing groups
FPKM:543.00 TPM:594.97
4934 A_BomoFB_comp1070875_c0_seq1
202bp
FPKM:3.47 TPM:3.81
4935 A_BomoFB_comp10712_c0_seq1
805bp
 ribosomal_protein_S24_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:572.26 TPM:627.04
4936 A_BomoFB_comp1071325_c0_seq1
255bp
 PREDICTED:_zinc_finger_protein_484-like_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.44 TPM:1.57
4937 A_BomoFB_comp1071384_c0_seq1
242bp
FPKM:0.85 TPM:0.93
4938 A_BomoFB_comp107149_c0_seq1
362bp
FPKM:0.91 TPM:1.00
4939 A_BomoFB_comp10714_c0_seq1
326bp
 60S_ribosomal_protein_L38_[Danaus_plexippus]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1046.63 TPM:1146.81
4940 A_BomoFB_comp1071569_c0_seq1
210bp
FPKM:1.46 TPM:1.60
4941 A_BomoFB_comp10715_c0_seq1
705bp
 PREDICTED:_40S_ribosomal_protein_S9_[Amyelois_transitella]
GO:0000022 P mitotic spindle elongation
GO:0000228 C nuclear chromosome
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0015935 C small ribosomal subunit
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0045903 P positive regulation of translational fidelity
FPKM:874.36 TPM:958.05
4942 A_BomoFB_comp10716_c0_seq1
560bp
 ribosomal_protein_L28_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:927.96 TPM:1016.78
4943 A_BomoFB_comp107176_c0_seq1
669bp
 putative_pol-like_protein,_partial_[Operophtera_brumata]
FPKM:3.35 TPM:3.67
4944 A_BomoFB_comp107193_c0_seq1
377bp
 PREDICTED:_FERM,_RhoGEF_and_pleckstrin_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007155 P cell adhesion
GO:0008092 F cytoskeletal protein binding
GO:0016322 P neuron remodeling
GO:0016601 P Rac protein signal transduction
GO:0019898 C extrinsic component of membrane
GO:0030316 P osteoclast differentiation
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031532 P actin cytoskeleton reorganization
GO:0033623 P regulation of integrin activation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0071526 P semaphorin-plexin signaling pathway
GO:0071800 P podosome assembly
FPKM:4.19 TPM:4.59
4945 A_BomoFB_comp107197_c0_seq1
413bp
FPKM:2.83 TPM:3.10
4946 A_BomoFB_comp10719_c0_seq1
411bp
 chitinase_[Photobacterium_angustum]
FPKM:743.93 TPM:815.14
4947 A_BomoFB_comp10720_c0_seq1
1020bp
 PREDICTED:_troponin_C,_isoform_3-like_isoform_X1_[Papilio_machaon]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
FPKM:564.58 TPM:618.62
4948 A_BomoFB_comp107238_c0_seq1
767bp
 carboxylesterase_CarE-5_[Bombyx_mandarina]
GO:0004771 F sterol esterase activity
GO:0004806 F triglyceride lipase activity
GO:0004872 F signaling receptor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005791 C rough endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005887 C integral component of plasma membrane
GO:0006629 P lipid metabolic process
GO:0006707 P cholesterol catabolic process
GO:0007158 P neuron cell-cell adhesion
GO:0007416 P synapse assembly
GO:0009986 C cell surface
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0030157 P pancreatic juice secretion
GO:0032403 F protein-containing complex binding
GO:0042043 F neurexin family protein binding
GO:0042572 P retinol metabolic process
GO:0042588 C zymogen granule
GO:0043208 F glycosphingolipid binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0045121 C membrane raft
GO:0045202 C synapse
GO:0046514 P ceramide catabolic process
GO:0050804 P modulation of chemical synaptic transmission
GO:0052689 F carboxylic ester hydrolase activity
GO:0070062 C extracellular exosome
FPKM:2.70 TPM:2.95
4949 A_BomoFB_comp10725_c0_seq1
917bp
 40S_ribosomal_protein_S4_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
FPKM:735.23 TPM:805.60
4950 A_BomoFB_comp107260_c0_seq1
544bp
FPKM:4.21 TPM:4.61
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