SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4891 A_BomoFB_comp10673_c0_seq1
512bp
 ribosomal_protein_L32_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1278.47 TPM:1400.85
4892 A_BomoFB_comp1067444_c0_seq1
205bp
FPKM:1.62 TPM:1.78
4893 A_BomoFB_comp106745_c0_seq1
650bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_tuberin_[Bombyx_mori]
GO:0001843 P neural tube closure
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006469 P negative regulation of protein kinase activity
GO:0006606 P protein import into nucleus
GO:0006897 P endocytosis
GO:0007050 P regulation of cell cycle
GO:0007507 P heart development
GO:0008104 P protein localization
GO:0008285 P negative regulation of cell population proliferation
GO:0014067 P negative regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016192 P vesicle-mediated transport
GO:0019902 F phosphatase binding
GO:0030100 P regulation of endocytosis
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031267 F small GTPase binding
GO:0032007 P negative regulation of TOR signaling
GO:0033596 C TSC1-TSC2 complex
GO:0042803 F protein homodimerization activity
GO:0043491 P protein kinase B signaling
GO:0043547 P positive regulation of GTPase activity
GO:0046626 P regulation of insulin receptor signaling pathway
GO:0046627 P negative regulation of insulin receptor signaling pathway
GO:0048009 P insulin-like growth factor receptor signaling pathway
GO:0048471 C perinuclear region of cytoplasm
GO:0050918 P positive chemotaxis
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0051726 P regulation of cell cycle
GO:0051898 P negative regulation of protein kinase B signaling
FPKM:5.00 TPM:5.48
4894 A_BomoFB_comp10674_c0_seq1
842bp
 ribosomal_protein_S3_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:1017.36 TPM:1114.74
4895 A_BomoFB_comp106758_c0_seq1
994bp
 PREDICTED:_uncharacterized_protein_LOC105393415_[Plutella_xylostella]
FPKM:3.55 TPM:3.89
4896 A_BomoFB_comp10676_c0_seq1
725bp
 hypothetical_protein_33_[Lonomia_obliqua]
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
FPKM:960.76 TPM:1052.72
4897 A_BomoFB_comp10677_c0_seq1
966bp
 PREDICTED:_ATP_synthase_lipid-binding_protein,_mitochondrial_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008289 F lipid binding
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0033177 C proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
FPKM:819.67 TPM:898.12
4898 A_BomoFB_comp1067836_c0_seq1
245bp
 alpha/beta_hydrolase_[Corynebacterium_genitalium]
FPKM:0.82 TPM:0.89
4899 A_BomoFB_comp1068086_c0_seq1
219bp
 hypothetical_protein_I35_4816_[Burkholderia_cenocepacia_H111]
FPKM:2.45 TPM:2.69
4900 A_BomoFB_comp10680_c0_seq1
763bp
 odorant_binding_protein_[Dendrolimus_kikuchii]
FPKM:988.34 TPM:1082.94
4901 A_BomoFB_comp1068106_c0_seq1
269bp
FPKM:1.22 TPM:1.34
4902 A_BomoFB_comp10681_c0_seq1
1075bp
 ribosome-associated_membrane_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030968 P endoplasmic reticulum unfolded protein response
FPKM:587.52 TPM:643.76
4903 A_BomoFB_comp1068249_c0_seq1
274bp
FPKM:1.16 TPM:1.27
4904 A_BomoFB_comp106832_c0_seq1
226bp
 hypothetical_protein_[Haemophilus_sp._FF7]
FPKM:1.08 TPM:1.19
4905 A_BomoFB_comp10684_c0_seq1
650bp
 60S_ribosomal_protein_L23_[Papilio_polytes]
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:876.63 TPM:960.55
4906 A_BomoFB_comp10686_c0_seq1
823bp
 acyl-CoA_binding_protein_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0006810 P transport
GO:0008289 F lipid binding
FPKM:486.88 TPM:533.48
4907 A_BomoFB_comp10687_c0_seq1
445bp
 PREDICTED:_60S_ribosomal_protein_L44_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1072.02 TPM:1174.63
4908 A_BomoFB_comp106883_c0_seq1
667bp
FPKM:3.59 TPM:3.93
4909 A_BomoFB_comp106888_c0_seq1
214bp
 VMPA_LOXIN_RecName:_Full=Astacin-like_metalloprotease_toxin_1;_AltName:_Full=Loxosceles_astacin-like_protease_1;_Short=LALP;_Short=LALP1;_Flags:_Precursor
FPKM:4.04 TPM:4.43
4910 A_BomoFB_comp10689_c0_seq1
659bp
 40S_ribosomal_protein_S14_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005575 C cellular_component
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
FPKM:947.26 TPM:1037.93
4911 A_BomoFB_comp1069024_c0_seq1
224bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_60S_ribosomal_protein_L36a-like_[Ailuropoda_melanoleuca]
FPKM:2.24 TPM:2.46
4912 A_BomoFB_comp1069138_c0_seq1
286bp
FPKM:1.04 TPM:1.13
4913 A_BomoFB_comp10691_c0_seq1
363bp
 hypothetical_protein_RR48_05765_[Papilio_machaon]
FPKM:1075.28 TPM:1178.21
4914 A_BomoFB_comp106927_c0_seq1
1398bp
 PREDICTED:_biotin--protein_ligase_[Bombyx_mori]
FPKM:3.17 TPM:3.48
4915 A_BomoFB_comp10692_c0_seq1
2253bp
 transferrin_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006810 P transport
GO:0006811 P ion transport
GO:0046872 F metal ion binding
GO:0055072 P iron ion homeostasis
FPKM:858.75 TPM:940.95
4916 A_BomoFB_comp10693_c0_seq1
627bp
 ribosomal_protein_L21_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0006364 P rRNA processing
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0016020 C membrane
GO:0019083 P viral transcription
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:925.76 TPM:1014.38
4917 A_BomoFB_comp106942_c0_seq1
1505bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_kinesin-like_protein_KIF13A_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0003777 F microtubule motor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0007018 P microtubule-based movement
GO:0007049 P cell cycle
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0030496 C midbody
GO:0032438 P melanosome organization
GO:0032588 C trans-Golgi network membrane
GO:0035459 P vesicle cargo loading
GO:0043001 P Golgi to plasma membrane protein transport
GO:0051301 P cell division
GO:0072383 P plus-end-directed vesicle transport along microtubule
FPKM:2.46 TPM:2.70
4918 A_BomoFB_comp1069434_c0_seq1
292bp
FPKM:0.49 TPM:0.54
4919 A_BomoFB_comp106957_c0_seq1
387bp
FPKM:1.86 TPM:2.04
4920 A_BomoFB_comp10695_c0_seq1
884bp
 ATP_synthase_F0_subunit_6_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
FPKM:522.26 TPM:572.25
previous next from show/35635

- SilkBase 1999-2023 -