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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4861 A_BomoFB_comp10651_c0_seq1
477bp
 PREDICTED:_60S_ribosomal_protein_L35_[Papilio_machaon]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1223.56 TPM:1340.68
4862 A_BomoFB_comp106527_c0_seq1
1273bp
 PREDICTED:_DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
FPKM:2.74 TPM:3.00
4863 A_BomoFB_comp10652_c0_seq1
495bp
 ribosomal_protein_S15A_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1358.02 TPM:1488.01
4864 A_BomoFB_comp10653_c0_seq1
1205bp
 ribosomal_protein_L5_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008097 F 5S rRNA binding
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
FPKM:1053.84 TPM:1154.71
4865 A_BomoFB_comp106544_c0_seq1
1274bp
 PREDICTED:_general_transcription_factor_IIH_subunit_2_[Amyelois_transitella]
GO:0000439 C transcription factor TFIIH core complex
GO:0003674 F molecular_function
GO:0004672 F protein kinase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0046872 F metal ion binding
FPKM:4.48 TPM:4.91
4866 A_BomoFB_comp10654_c0_seq1
706bp
 ribosomal_protein_L11_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000027 P ribosomal large subunit assembly
GO:0000228 C nuclear chromosome
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0019233 P sensory perception of pain
GO:0019843 F rRNA binding
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0051298 P centrosome duplication
FPKM:1262.11 TPM:1382.92
4867 A_BomoFB_comp10655_c0_seq1
703bp
 ribosomal_protein_L18A_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:996.23 TPM:1091.59
4868 A_BomoFB_comp106569_c0_seq1
943bp
 peptide_ABC_transporter_permease_[Lechevalieria_aerocolonigenes]
FPKM:3.93 TPM:4.31
4869 A_BomoFB_comp10656_c0_seq1
2923bp
 translation_elongation_factor_2_isoform_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0008150 P biological_process
FPKM:1118.45 TPM:1225.51
4870 A_BomoFB_comp1065709_c0_seq1
277bp
FPKM:1.13 TPM:1.24
4871 A_BomoFB_comp10657_c0_seq1
507bp
 ribosomal_protein_S30_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
FPKM:1161.52 TPM:1272.70
4872 A_BomoFB_comp1065867_c0_seq1
207bp
FPKM:1.55 TPM:1.70
4873 A_BomoFB_comp10658_c0_seq1
653bp
 ribosomal_protein_S7_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1292.62 TPM:1416.35
4874 A_BomoFB_comp10659_c0_seq1
459bp
 40S_ribosomal_protein_S27_[Papilio_machaon]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:1140.50 TPM:1249.67
4875 A_BomoFB_comp10660_c0_seq1
451bp
 ribosomal_protein_L31_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1475.65 TPM:1616.90
4876 A_BomoFB_comp1066297_c0_seq1
260bp
 PREDICTED:_nuclear_pore_complex_protein_Nup88_[Bombyx_mori]
FPKM:1.35 TPM:1.48
4877 A_BomoFB_comp1066366_c0_seq1
243bp
 PREDICTED:_uncharacterized_protein_LOC101737360_[Bombyx_mori]
FPKM:1.68 TPM:1.84
4878 A_BomoFB_comp10664_c0_seq1
620bp
FPKM:486.01 TPM:532.53
4879 A_BomoFB_comp10664_c1_seq1
550bp
 ribosomal_protein_L26_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:1115.77 TPM:1222.57
4880 A_BomoFB_comp10665_c0_seq1
485bp
 ribosomal_protein_L30_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1196.79 TPM:1311.34
4881 A_BomoFB_comp106661_c0_seq1
684bp
FPKM:3.68 TPM:4.04
4882 A_BomoFB_comp106676_c0_seq1
989bp
 PREDICTED:_RNA_polymerase_II_transcription_factor_B_subunit_2_[Amyelois_transitella]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
FPKM:4.04 TPM:4.43
4883 A_BomoFB_comp10668_c0_seq1
2569bp
 ribosomal_protein_S12_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:183.86 TPM:201.46
4884 A_BomoFB_comp1066926_c0_seq1
260bp
 PREDICTED:_eye-specific_diacylglycerol_kinase_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004143 F diacylglycerol kinase activity
GO:0005524 F ATP binding
GO:0005875 C microtubule associated complex
GO:0006654 P phosphatidic acid biosynthetic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0007015 P actin filament organization
GO:0007205 P protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0007605 P sensory perception of sound
GO:0007608 P sensory perception of smell
GO:0016020 C membrane
GO:0016056 P rhodopsin mediated signaling pathway
GO:0016059 P deactivation of rhodopsin mediated signaling
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019992 F diacylglycerol binding
GO:0035556 P intracellular signal transduction
GO:0043052 P thermotaxis
GO:0045494 P photoreceptor cell maintenance
GO:0046834 P lipid phosphorylation
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
FPKM:1.35 TPM:1.48
4885 A_BomoFB_comp1066960_c0_seq1
253bp
 phospholipid-transporting_ATPase_1_[Magnaporthe_oryzae_70-15]
FPKM:0.00 TPM:0.00
4886 A_BomoFB_comp10669_c0_seq1
936bp
 ribosomal_protein_S2_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007275 P multicellular organism development
GO:0015935 C small ribosomal subunit
GO:0022627 C cytosolic small ribosomal subunit
GO:0030154 P cell differentiation
GO:0030529 C ribonucleoprotein complex
GO:0048477 P oogenesis
FPKM:1130.44 TPM:1238.64
4887 A_BomoFB_comp10670_c0_seq1
548bp
 ribosomal_protein_S20_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015935 C small ribosomal subunit
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:1314.83 TPM:1440.69
4888 A_BomoFB_comp10671_c0_seq1
1051bp
 PREDICTED:_3-hydroxyisobutyrate_dehydrogenase_isoform_X1_[Bombyx_mori]
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005739 C mitochondrion
GO:0006574 P valine catabolic process
GO:0008442 F 3-hydroxyisobutyrate dehydrogenase activity
GO:0009083 P branched-chain amino acid catabolic process
GO:0016491 F oxidoreductase activity
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:1190.72 TPM:1304.70
4889 A_BomoFB_comp10672_c0_seq1
337bp
 40S_ribosomal_protein_S29_[Papilio_xuthus]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:1347.75 TPM:1476.75
4890 A_BomoFB_comp106738_c0_seq1
1337bp
 PREDICTED:_EH_domain-binding_protein_1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
FPKM:4.56 TPM:5.00
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