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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4831 A_BomoFB_comp10628_c0_seq1
692bp
 ribosomal_protein_L9_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
FPKM:1237.57 TPM:1356.03
4832 A_BomoFB_comp10629_c0_seq1
2295bp
 PREDICTED:_aldo-keto_reductase_AKR2E4-like_[Amyelois_transitella]
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:641.59 TPM:703.00
4833 A_BomoFB_comp10631_c0_seq1
384bp
 fungal_protease_inhibitor_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:1459.61 TPM:1599.32
4834 A_BomoFB_comp10632_c0_seq1
752bp
 ribosomal_protein_L19_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0051298 P centrosome duplication
FPKM:1379.40 TPM:1511.44
4835 A_BomoFB_comp10633_c0_seq1
1219bp
 PREDICTED:_60S_ribosomal_protein_L8_[Plutella_xylostella]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
FPKM:977.62 TPM:1071.20
4836 A_BomoFB_comp106347_c0_seq1
1472bp
 PREDICTED:_palmitoyltransferase_ZDHHC5_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0030425 C dendrite
GO:0046872 F metal ion binding
FPKM:3.64 TPM:3.98
4837 A_BomoFB_comp106348_c0_seq1
924bp
 PREDICTED:_uncharacterized_protein_LOC101745524_isoform_X1_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001736 P establishment of planar polarity
GO:0001822 P kidney development
GO:0001889 P liver development
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005911 C cell-cell junction
GO:0005923 C bicellular tight junction
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0007163 P establishment or maintenance of cell polarity
GO:0007368 P determination of left/right symmetry
GO:0007420 P brain development
GO:0008589 P regulation of smoothened signaling pathway
GO:0021532 P neural tube patterning
GO:0021537 P telencephalon development
GO:0021549 P cerebellum development
GO:0021670 P lateral ventricle development
GO:0021772 P olfactory bulb development
GO:0022038 P corpus callosum development
GO:0030054 C cell junction
GO:0031870 F thromboxane A2 receptor binding
GO:0035108 P limb morphogenesis
GO:0035115 P embryonic forelimb morphogenesis
GO:0035116 P embryonic hindlimb morphogenesis
GO:0035869 C ciliary transition zone
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0043010 P camera-type eye development
GO:0043584 P nose development
GO:0044767 P developmental process
GO:0045744 P negative regulation of G protein-coupled receptor signaling pathway
GO:0060039 P pericardium development
GO:0060271 P cilium assembly
GO:0060322 P head development
GO:0090102 P cochlea development
FPKM:2.78 TPM:3.05
4838 A_BomoFB_comp10634_c0_seq1
1590bp
 SPARC_precursor_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0046872 F metal ion binding
FPKM:1131.79 TPM:1240.12
4839 A_BomoFB_comp106356_c0_seq1
2372bp
FPKM:2.80 TPM:3.07
4840 A_BomoFB_comp106366_c0_seq1
915bp
 PREDICTED:_coiled-coil_domain-containing_protein_97_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005686 C U2 snRNP
GO:0008150 P biological_process
FPKM:2.89 TPM:3.17
4841 A_BomoFB_comp10636_c0_seq1
727bp
 ribosomal_protein_S11_isoform_2_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0005925 C focal adhesion
GO:0006412 P translation
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0019843 F rRNA binding
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:986.12 TPM:1080.51
4842 A_BomoFB_comp10637_c0_seq1
936bp
 ribosomal_protein_L7_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 P cytoplasmic translation
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0019843 F rRNA binding
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0035073 P pupariation
GO:0044822 F RNA binding
GO:0051298 P centrosome duplication
FPKM:1353.38 TPM:1482.92
4843 A_BomoFB_comp10638_c0_seq1
931bp
 diapause_associated_protein_2_[Antheraea_pernyi]
FPKM:1056.14 TPM:1157.24
4844 A_BomoFB_comp10639_c0_seq1
1350bp
 ribosomal_protein_L3_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000027 P ribosomal large subunit assembly
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0019233 P sensory perception of pain
GO:0022625 C cytosolic large ribosomal subunit
GO:0022626 C cytosolic ribosome
GO:0030529 C ribonucleoprotein complex
GO:0051297 P centrosome cycle
GO:0051298 P centrosome duplication
FPKM:1400.96 TPM:1535.06
4845 A_BomoFB_comp1063_c0_seq1
285bp
 PREDICTED:_uncharacterized_protein_LOC105398201_[Plutella_xylostella]
FPKM:1.57 TPM:1.72
4846 A_BomoFB_comp1064026_c0_seq1
298bp
 hypothetical_protein_L21SP2_0850_[Salinispira_pacifica]
FPKM:0.47 TPM:0.51
4847 A_BomoFB_comp106403_c0_seq1
1664bp
 PREDICTED:_protein_O-mannosyltransferase_1_isoform_X2_[Bombyx_mori]
GO:0000030 F mannosyltransferase activity
GO:0004169 F dolichyl-phosphate-mannose-protein mannosyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006493 P protein O-linked glycosylation
GO:0007275 P multicellular organism development
GO:0007385 P specification of segmental identity, abdomen
GO:0007517 P muscle organ development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030259 P lipid glycosylation
GO:0035269 P protein O-linked mannosylation
GO:0097502 P mannosylation
FPKM:3.08 TPM:3.37
4848 A_BomoFB_comp1064193_c0_seq1
229bp
FPKM:2.06 TPM:2.26
4849 A_BomoFB_comp10641_c0_seq1
610bp
 ribosomal_protein_S13_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1257.70 TPM:1378.09
4850 A_BomoFB_comp10643_c0_seq1
337bp
FPKM:1142.32 TPM:1251.66
4851 A_BomoFB_comp10644_c0_seq1
1327bp
 PREDICTED:_glycine_N-methyltransferase_[Amyelois_transitella]
GO:0001887 P selenium compound metabolic process
GO:0005542 F folic acid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006544 P glycine metabolic process
GO:0008168 F methyltransferase activity
GO:0008757 F S-adenosylmethionine-dependent methyltransferase activity
GO:0016594 F glycine binding
GO:0016740 F transferase activity
GO:0017174 F glycine N-methyltransferase activity
GO:0032259 P methylation
GO:0046498 P S-adenosylhomocysteine metabolic process
GO:0046500 P S-adenosylmethionine metabolic process
GO:0046655 P folic acid metabolic process
GO:0051262 P protein tetramerization
GO:0051289 P protein homotetramerization
GO:0098603 F selenol Se-methyltransferase activity
GO:1901052 P sarcosine metabolic process
FPKM:914.14 TPM:1001.65
4852 A_BomoFB_comp10645_c0_seq1
565bp
 ribosomal_protein_L24_[Bombyx_mori]
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
FPKM:1336.62 TPM:1464.56
4853 A_BomoFB_comp1064714_c0_seq1
215bp
 Dual_specificity_tyrosine-phosphorylation-regulated_kinase_2_[Papilio_xuthus]
FPKM:2.64 TPM:2.89
4854 A_BomoFB_comp106476_c0_seq1
2302bp
 PREDICTED:_ubiquitin-protein_ligase_E3B_[Amyelois_transitella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:2.18 TPM:2.39
4855 A_BomoFB_comp10647_c0_seq1
576bp
 ribosomal_protein_L40_[Euphydryas_aurinia]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0005875 C microtubule associated complex
GO:0006412 P translation
GO:0006464 P cellular protein modification process
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007219 P Notch signaling pathway
GO:0016567 P protein ubiquitination
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0031386 F protein tag
FPKM:1264.81 TPM:1385.88
4856 A_BomoFB_comp10648_c0_seq1
615bp
 60S_ribosomal_protein_L18_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1199.87 TPM:1314.73
4857 A_BomoFB_comp106494_c0_seq1
552bp
FPKM:3.68 TPM:4.03
4858 A_BomoFB_comp106498_c0_seq1
217bp
 hypothetical_protein_ACD_72C00248G0001,_partial_[uncultured_bacterium]
FPKM:2.54 TPM:2.79
4859 A_BomoFB_comp10649_c0_seq1
1210bp
 PREDICTED:_uncharacterized_protein_LOC106709627_[Papilio_machaon]
FPKM:1038.03 TPM:1137.39
4860 A_BomoFB_comp10650_c0_seq1
478bp
 ribosomal_protein_L34_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:1304.65 TPM:1429.53
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