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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
451 A_BomoFB_comp10099_c0_seq3
794bp
FPKM:27.81 TPM:30.47
452 A_BomoFB_comp10099_c0_seq4
470bp
FPKM:3.39 TPM:3.72
453 A_BomoFB_comp10099_c0_seq5
1467bp
 PREDICTED:_lysoplasmalogenase-like_protein_TMEM86A_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046485 P ether lipid metabolic process
GO:0047408 F alkenylglycerophosphocholine hydrolase activity
GO:0047409 F alkenylglycerophosphoethanolamine hydrolase activity
FPKM:1.01 TPM:1.11
454 A_BomoFB_comp10100_c0_seq1
3194bp
 PREDICTED:_meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005777 C peroxisome
GO:0010468 P regulation of gene expression
GO:0030154 P cell differentiation
GO:0048477 P oogenesis
GO:0051321 P meiotic cell cycle
FPKM:9.45 TPM:10.35
455 A_BomoFB_comp101012_c0_seq1
945bp
 hypothetical_protein_KGM_08958_[Danaus_plexippus]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:3.13 TPM:3.44
456 A_BomoFB_comp10101_c0_seq1
2570bp
 PREDICTED:_zinc_finger_RNA-binding_protein-like_isoform_X2_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:0.31 TPM:0.34
457 A_BomoFB_comp10101_c0_seq2
2759bp
 PREDICTED:_zinc_finger_RNA-binding_protein-like_isoform_X6_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:13.24 TPM:14.50
458 A_BomoFB_comp10101_c0_seq3
1633bp
 PREDICTED:_zinc_finger_RNA-binding_protein-like_isoform_X6_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:0.57 TPM:0.63
459 A_BomoFB_comp10101_c0_seq4
1444bp
 PREDICTED:_zinc_finger_RNA-binding_protein-like_isoform_X4_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
460 A_BomoFB_comp101026_c0_seq1
294bp
FPKM:4.34 TPM:4.76
461 A_BomoFB_comp10102_c0_seq1
303bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.53 TPM:1.68
462 A_BomoFB_comp10102_c0_seq2
365bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.96 TPM:2.15
463 A_BomoFB_comp101036_c0_seq1
740bp
 PREDICTED:_probable_tRNA_N6-adenosine_threonylcarbamoyltransferase_[Plutella_xylostella]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046872 F metal ion binding
GO:0061711 F N(6)-L-threonylcarbamoyladenine synthase activity
FPKM:4.58 TPM:5.02
464 A_BomoFB_comp10103_c0_seq1
1334bp
 Sr_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:21.43 TPM:23.48
465 A_BomoFB_comp10103_c0_seq2
2001bp
 Sr_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:6.76 TPM:7.41
466 A_BomoFB_comp10103_c0_seq3
1943bp
 Sr_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
FPKM:8.03 TPM:8.80
467 A_BomoFB_comp10104_c0_seq1
762bp
FPKM:10.78 TPM:11.82
468 A_BomoFB_comp101058_c0_seq1
579bp
FPKM:1.78 TPM:1.95
469 A_BomoFB_comp10105_c0_seq1
907bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
FPKM:1.15 TPM:1.26
470 A_BomoFB_comp10105_c0_seq2
1058bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X4_[Bombyx_mori]
GO:0005451 F monovalent cation:proton antiporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
GO:2001206 P positive regulation of osteoclast development
FPKM:0.68 TPM:0.75
471 A_BomoFB_comp10105_c0_seq3
1509bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
FPKM:0.53 TPM:0.58
472 A_BomoFB_comp10105_c0_seq4
1751bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
FPKM:1.47 TPM:1.61
473 A_BomoFB_comp10105_c0_seq5
901bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
FPKM:0.00 TPM:0.00
474 A_BomoFB_comp10105_c0_seq6
1503bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
FPKM:0.05 TPM:0.06
475 A_BomoFB_comp10105_c0_seq7
1757bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
FPKM:2.61 TPM:2.86
476 A_BomoFB_comp10105_c0_seq8
1306bp
 PREDICTED:_mitochondrial_sodium/hydrogen_exchanger_9B2-like_isoform_X1_[Bombyx_mori]
GO:0005451 F monovalent cation:proton antiporter activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006814 P sodium ion transport
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902600 P proton transmembrane transport
GO:2001206 P positive regulation of osteoclast development
FPKM:0.06 TPM:0.07
477 A_BomoFB_comp10106_c0_seq1
456bp
FPKM:0.80 TPM:0.87
478 A_BomoFB_comp10106_c1_seq1
1279bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.33 TPM:2.55
479 A_BomoFB_comp10106_c1_seq2
1343bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.00 TPM:0.00
480 A_BomoFB_comp10106_c1_seq3
410bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
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