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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
481 A_BomoFB_comp10106_c1_seq4
474bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.54 TPM:3.88
482 A_BomoFB_comp101076_c0_seq1
311bp
 PREDICTED:_uncharacterized_protein_LOC106100053_[Papilio_polytes]
FPKM:7.15 TPM:7.84
483 A_BomoFB_comp101077_c0_seq1
211bp
FPKM:1.43 TPM:1.57
484 A_BomoFB_comp10107_c0_seq1
1743bp
 Organic_cation_transporter_[Operophtera_brumata]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:13.54 TPM:14.83
485 A_BomoFB_comp10107_c1_seq1
620bp
 PREDICTED:_organic_cation_transporter_protein-like_[Papilio_xuthus]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:4.52 TPM:4.95
486 A_BomoFB_comp10107_c1_seq2
718bp
 PREDICTED:_organic_cation_transporter_protein-like_[Papilio_xuthus]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:6.05 TPM:6.63
487 A_BomoFB_comp101085_c0_seq1
4754bp
 PREDICTED:_rho_guanine_nucleotide_exchange_factor_17_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0030036 P actin cytoskeleton organization
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:2.75 TPM:3.01
488 A_BomoFB_comp10108_c0_seq1
1948bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.00 TPM:2.19
489 A_BomoFB_comp10108_c0_seq2
3949bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Papilio_xuthus]
GO:0005515 F protein binding
FPKM:1.89 TPM:2.07
490 A_BomoFB_comp10108_c0_seq3
2857bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:15.57 TPM:17.06
491 A_BomoFB_comp10108_c0_seq4
4858bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Amyelois_transitella]
GO:0005515 F protein binding
FPKM:8.64 TPM:9.47
492 A_BomoFB_comp10109_c1_seq1
1413bp
FPKM:7.53 TPM:8.25
493 A_BomoFB_comp10109_c1_seq2
1511bp
 PREDICTED:_secretory_carrier-associated_membrane_protein_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0008021 C synaptic vesicle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0042589 C zymogen granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045202 C synapse
GO:0055038 C recycling endosome membrane
FPKM:2.94 TPM:3.22
494 A_BomoFB_comp10109_c1_seq3
1234bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.69 TPM:5.14
495 A_BomoFB_comp10109_c1_seq4
2421bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.00 TPM:0.00
496 A_BomoFB_comp10109_c1_seq5
1504bp
FPKM:0.17 TPM:0.19
497 A_BomoFB_comp10109_c2_seq1
1211bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.37 TPM:4.79
498 A_BomoFB_comp10109_c2_seq10
460bp
FPKM:1.66 TPM:1.82
499 A_BomoFB_comp10109_c2_seq2
1666bp
 U1_small_nuclear_ribonucleoprotein_70_kDa_[Trichuris_trichiura]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:6.06 TPM:6.64
500 A_BomoFB_comp10109_c2_seq3
1296bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:8.60 TPM:9.43
501 A_BomoFB_comp10109_c2_seq4
847bp
FPKM:1.15 TPM:1.26
502 A_BomoFB_comp10109_c2_seq5
402bp
FPKM:1.17 TPM:1.28
503 A_BomoFB_comp10109_c2_seq6
756bp
FPKM:0.00 TPM:0.00
504 A_BomoFB_comp10109_c2_seq7
1474bp
 PREDICTED:_secretory_carrier-associated_membrane_protein_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0008021 C synaptic vesicle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0042589 C zymogen granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045202 C synapse
GO:0055038 C recycling endosome membrane
FPKM:12.79 TPM:14.01
505 A_BomoFB_comp10109_c2_seq8
311bp
FPKM:8.36 TPM:9.16
506 A_BomoFB_comp10109_c2_seq9
1126bp
FPKM:0.00 TPM:0.00
507 A_BomoFB_comp1010_c0_seq1
315bp
 hypothetical_protein_TcasGA2_TC031640_[Tribolium_castaneum]
FPKM:0.82 TPM:0.89
508 A_BomoFB_comp101103_c0_seq1
733bp
FPKM:3.06 TPM:3.35
509 A_BomoFB_comp101107_c0_seq1
1102bp
FPKM:3.13 TPM:3.43
510 A_BomoFB_comp10110_c0_seq1
11897bp
 PREDICTED:_ryanodine_receptor_44F_isoform_X21_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005219 F ryanodine-sensitive calcium-release channel activity
GO:0005262 F calcium channel activity
GO:0005789 C endoplasmic reticulum membrane
GO:0005875 C microtubule associated complex
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006936 P muscle contraction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016529 C sarcoplasmic reticulum
GO:0033017 C sarcoplasmic reticulum membrane
GO:0035206 P regulation of hemocyte proliferation
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0055085 P transmembrane transport
GO:0060047 P heart contraction
GO:0070588 P calcium ion transmembrane transport
GO:0072347 P response to anesthetic
FPKM:0.43 TPM:0.48
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