SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3871 A_BomoFB_comp10540_c2_seq14
534bp
FPKM:27.12 TPM:29.72
3872 A_BomoFB_comp10540_c2_seq15
994bp
 PREDICTED:_protein_disulfide-isomerase_TMX3_[Amyelois_transitella]
FPKM:1.49 TPM:1.63
3873 A_BomoFB_comp10540_c2_seq16
2518bp
 glutamic_acid-rich_protein-like_[Papilio_polytes]
FPKM:7.75 TPM:8.49
3874 A_BomoFB_comp10540_c2_seq17
271bp
 methylated_DNA-protein_cysteine_methyltransferase_[Bombyx_mori]
FPKM:2.14 TPM:2.34
3875 A_BomoFB_comp10540_c2_seq18
2470bp
 small_heat_shock_protein_19.3_[Spodoptera_litura]
GO:0006497 P protein lipidation
GO:0007275 P multicellular organism development
GO:0010506 P regulation of autophagy
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
FPKM:18.30 TPM:20.05
3876 A_BomoFB_comp10540_c2_seq19
859bp
 PREDICTED:_protein_disulfide-isomerase_TMX3_[Amyelois_transitella]
FPKM:0.94 TPM:1.03
3877 A_BomoFB_comp10540_c2_seq2
396bp
FPKM:1.20 TPM:1.31
3878 A_BomoFB_comp10540_c2_seq20
686bp
 PREDICTED:_protein_disulfide-isomerase_TMX3_[Amyelois_transitella]
FPKM:0.51 TPM:0.56
3879 A_BomoFB_comp10540_c2_seq21
359bp
FPKM:0.71 TPM:0.78
3880 A_BomoFB_comp10540_c2_seq22
1634bp
 hypothetical_protein_JCM19298_402_[Nonlabens_ulvanivorans]
FPKM:8.32 TPM:9.12
3881 A_BomoFB_comp10540_c2_seq23
212bp
FPKM:1.80 TPM:1.97
3882 A_BomoFB_comp10540_c2_seq24
2012bp
 PREDICTED:_cilia-_and_flagella-associated_protein_61_[Bombyx_mori]
FPKM:5.40 TPM:5.92
3883 A_BomoFB_comp10540_c2_seq25
1634bp
FPKM:0.12 TPM:0.13
3884 A_BomoFB_comp10540_c2_seq26
350bp
FPKM:0.92 TPM:1.01
3885 A_BomoFB_comp10540_c2_seq27
1778bp
FPKM:0.00 TPM:0.00
3886 A_BomoFB_comp10540_c2_seq28
308bp
FPKM:3.06 TPM:3.35
3887 A_BomoFB_comp10540_c2_seq29
520bp
FPKM:0.00 TPM:0.00
3888 A_BomoFB_comp10540_c2_seq3
313bp
FPKM:0.00 TPM:0.00
3889 A_BomoFB_comp10540_c2_seq30
2195bp
 small_heat_shock_protein_19.3_[Spodoptera_litura]
GO:0006497 P protein lipidation
GO:0007275 P multicellular organism development
GO:0010506 P regulation of autophagy
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
FPKM:13.40 TPM:14.68
3890 A_BomoFB_comp10540_c2_seq31
2854bp
 PREDICTED:_THAP_domain-containing_protein_2-like_[Bombyx_mori]
FPKM:11.00 TPM:12.05
3891 A_BomoFB_comp10540_c2_seq4
366bp
 PREDICTED:_protein_disulfide-isomerase_TMX3_[Amyelois_transitella]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016853 F isomerase activity
GO:0045454 P cell redox homeostasis
FPKM:2.96 TPM:3.24
3892 A_BomoFB_comp10540_c2_seq5
242bp
 PREDICTED:_THAP_domain-containing_protein_2-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3893 A_BomoFB_comp10540_c2_seq6
890bp
FPKM:0.12 TPM:0.13
3894 A_BomoFB_comp10540_c2_seq7
232bp
 hypothetical_protein_[Streptomyces_sp._769]
FPKM:2.95 TPM:3.24
3895 A_BomoFB_comp10540_c2_seq8
385bp
FPKM:0.00 TPM:0.00
3896 A_BomoFB_comp10540_c2_seq9
214bp
FPKM:1.94 TPM:2.12
3897 A_BomoFB_comp10540_c3_seq1
5498bp
 PREDICTED:_uncharacterized_protein_LOC106120517_isoform_X2_[Papilio_xuthus]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0045454 P cell redox homeostasis
FPKM:6.93 TPM:7.59
3898 A_BomoFB_comp10540_c3_seq2
4417bp
 PREDICTED:_uncharacterized_protein_LOC101735409_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0003756 F protein disulfide isomerase activity
GO:0004656 F procollagen-proline 4-dioxygenase activity
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006457 P protein folding
GO:0009897 C external side of plasma membrane
GO:0016020 C membrane
GO:0016222 C procollagen-proline 4-dioxygenase complex
GO:0016853 F isomerase activity
GO:0018401 P peptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0019899 F enzyme binding
GO:0034663 C endoplasmic reticulum chaperone complex
GO:0034976 P response to endoplasmic reticulum stress
GO:0042158 P lipoprotein biosynthetic process
GO:0042470 C melanosome
GO:0044822 F RNA binding
GO:0045454 P cell redox homeostasis
GO:0046598 P positive regulation of viral entry into host cell
GO:0046982 F protein heterodimerization activity
GO:0070062 C extracellular exosome
GO:0071456 P cellular response to hypoxia
GO:1902175 P regulation of oxidative stress-induced intrinsic apoptotic signaling pathway
FPKM:50.30 TPM:55.11
3899 A_BomoFB_comp10540_c3_seq3
5514bp
 PREDICTED:_uncharacterized_protein_LOC101735409_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0016491 F oxidoreductase activity
GO:0016853 F isomerase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0036498 P IRE1-mediated unfolded protein response
GO:0045454 P cell redox homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.15 TPM:1.26
3900 A_BomoFB_comp105415_c0_seq1
1008bp
 PREDICTED:_ribosome_biogenesis_protein_BOP1_homolog_[Bombyx_mori]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0043021 F ribonucleoprotein complex binding
FPKM:2.76 TPM:3.03
previous next from show/35635

- SilkBase 1999-2023 -