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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3691 A_BomoFB_comp10532_c0_seq5
3053bp
 PREDICTED:_filamin-A_isoform_X3_[Papilio_xuthus]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0007067 P mitotic cell cycle
GO:0007301 P female germline ring canal formation
GO:0007303 P cytoplasmic transport, nurse cell to oocyte
GO:0007611 P learning or memory
GO:0008045 P motor neuron axon guidance
GO:0008104 P protein localization
GO:0008302 P female germline ring canal formation, actin assembly
GO:0008340 P determination of adult lifespan
GO:0008355 P olfactory learning
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0030725 P germline ring canal formation
GO:0035182 C female germline ring canal outer rim
GO:0035183 C female germline ring canal inner rim
GO:0035204 P negative regulation of lamellocyte differentiation
GO:0035324 C female germline ring canal
GO:0045179 C apical cortex
GO:0048149 P behavioral response to ethanol
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0051495 P positive regulation of cytoskeleton organization
GO:0070938 C contractile ring
FPKM:0.00 TPM:0.00
3692 A_BomoFB_comp10532_c0_seq6
328bp
FPKM:2.27 TPM:2.49
3693 A_BomoFB_comp10532_c0_seq7
475bp
FPKM:0.62 TPM:0.68
3694 A_BomoFB_comp10532_c0_seq8
2914bp
 PREDICTED:_filamin-A_isoform_X2_[Papilio_xuthus]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0007067 P mitotic cell cycle
GO:0007301 P female germline ring canal formation
GO:0007303 P cytoplasmic transport, nurse cell to oocyte
GO:0007611 P learning or memory
GO:0008045 P motor neuron axon guidance
GO:0008104 P protein localization
GO:0008302 P female germline ring canal formation, actin assembly
GO:0008340 P determination of adult lifespan
GO:0008355 P olfactory learning
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030708 P germarium-derived female germ-line cyst encapsulation
GO:0030725 P germline ring canal formation
GO:0035182 C female germline ring canal outer rim
GO:0035183 C female germline ring canal inner rim
GO:0035204 P negative regulation of lamellocyte differentiation
GO:0035324 C female germline ring canal
GO:0045179 C apical cortex
GO:0048149 P behavioral response to ethanol
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0051495 P positive regulation of cytoskeleton organization
GO:0070938 C contractile ring
FPKM:2.96 TPM:3.25
3695 A_BomoFB_comp10532_c0_seq9
456bp
FPKM:0.20 TPM:0.22
3696 A_BomoFB_comp105339_c0_seq1
1147bp
 hypothetical_protein_KGM_00180_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
FPKM:2.93 TPM:3.21
3697 A_BomoFB_comp10533_c0_seq1
557bp
FPKM:11.90 TPM:13.04
3698 A_BomoFB_comp10533_c1_seq1
512bp
FPKM:2.31 TPM:2.53
3699 A_BomoFB_comp10533_c2_seq1
335bp
 secretion_protein_HlyD_[Leptospira_weilii]
FPKM:1.47 TPM:1.61
3700 A_BomoFB_comp10533_c2_seq10
450bp
FPKM:0.16 TPM:0.18
3701 A_BomoFB_comp10533_c2_seq11
1618bp
FPKM:0.17 TPM:0.18
3702 A_BomoFB_comp10533_c2_seq12
1836bp
 PREDICTED:_39S_ribosomal_protein_L3,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
3703 A_BomoFB_comp10533_c2_seq13
2555bp
 methylglutaconyl-CoA_hydratase_[Agrotis_segetum]
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016829 F lyase activity
FPKM:1.27 TPM:1.39
3704 A_BomoFB_comp10533_c2_seq14
1149bp
FPKM:0.00 TPM:0.00
3705 A_BomoFB_comp10533_c2_seq15
1478bp
FPKM:0.06 TPM:0.06
3706 A_BomoFB_comp10533_c2_seq16
1585bp
 PREDICTED:_39S_ribosomal_protein_L3,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:14.58 TPM:15.98
3707 A_BomoFB_comp10533_c2_seq17
2038bp
 Nucleolar_and_coiled-body_phosphoprotein_1_[Papilio_machaon]
FPKM:0.72 TPM:0.79
3708 A_BomoFB_comp10533_c2_seq18
1394bp
FPKM:0.00 TPM:0.00
3709 A_BomoFB_comp10533_c2_seq19
1593bp
 PREDICTED:_39S_ribosomal_protein_L3,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
3710 A_BomoFB_comp10533_c2_seq2
1202bp
FPKM:0.00 TPM:0.00
3711 A_BomoFB_comp10533_c2_seq20
3478bp
 PREDICTED:_39S_ribosomal_protein_L3,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
3712 A_BomoFB_comp10533_c2_seq21
1499bp
 Nucleolar_and_coiled-body_phosphoprotein_1_[Papilio_machaon]
FPKM:5.35 TPM:5.86
3713 A_BomoFB_comp10533_c2_seq22
992bp
 hypothetical_protein_KGM_21242_[Danaus_plexippus]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0043086 P negative regulation of catalytic activity
GO:0044822 F RNA binding
GO:0050999 P regulation of nitric-oxide synthase activity
GO:0051001 P negative regulation of nitric-oxide synthase activity
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.00 TPM:0.00
3714 A_BomoFB_comp10533_c2_seq23
1062bp
FPKM:0.00 TPM:0.00
3715 A_BomoFB_comp10533_c2_seq24
1801bp
 S-phase_kinase-associated_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031467 C Cul7-RING ubiquitin ligase complex
FPKM:0.89 TPM:0.98
3716 A_BomoFB_comp10533_c2_seq25
1289bp
FPKM:0.00 TPM:0.00
3717 A_BomoFB_comp10533_c2_seq26
2017bp
FPKM:0.00 TPM:0.00
3718 A_BomoFB_comp10533_c2_seq27
592bp
 PREDICTED:_tigger_transposable_element-derived_protein_4-like_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
FPKM:7.52 TPM:8.24
3719 A_BomoFB_comp10533_c2_seq28
2226bp
 methylglutaconyl-CoA_hydratase_[Agrotis_segetum]
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016829 F lyase activity
FPKM:2.04 TPM:2.23
3720 A_BomoFB_comp10533_c2_seq29
2939bp
 PREDICTED:_39S_ribosomal_protein_L3,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:0.00 TPM:0.00
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