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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2161 A_BomoFB_comp10425_c0_seq11
597bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.50 TPM:2.74
2162 A_BomoFB_comp10425_c0_seq12
2364bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.49 TPM:0.54
2163 A_BomoFB_comp10425_c0_seq13
1238bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:4.54 TPM:4.98
2164 A_BomoFB_comp10425_c0_seq14
2003bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:0.00 TPM:0.00
2165 A_BomoFB_comp10425_c0_seq15
3129bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:3.63 TPM:3.98
2166 A_BomoFB_comp10425_c0_seq2
1108bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2167 A_BomoFB_comp10425_c0_seq3
1531bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:0.81 TPM:0.89
2168 A_BomoFB_comp10425_c0_seq4
661bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.52 TPM:1.66
2169 A_BomoFB_comp10425_c0_seq5
1556bp
 PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:2.97 TPM:3.25
2170 A_BomoFB_comp10425_c0_seq6
727bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2171 A_BomoFB_comp10425_c0_seq7
413bp
FPKM:2.36 TPM:2.59
2172 A_BomoFB_comp10425_c0_seq8
791bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2173 A_BomoFB_comp10425_c0_seq9
2234bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.33 TPM:0.36
2174 A_BomoFB_comp10425_c1_seq1
734bp
FPKM:4.73 TPM:5.18
2175 A_BomoFB_comp10425_c2_seq1
523bp
FPKM:2.87 TPM:3.15
2176 A_BomoFB_comp104266_c0_seq1
783bp
 PREDICTED:_DNA_ligase_3_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0033151 P V(D)J recombination
GO:0043504 P mitochondrial DNA repair
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070421 C DNA ligase III-XRCC1 complex
GO:0071897 P DNA biosynthetic process
GO:0090298 P negative regulation of mitochondrial DNA replication
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
FPKM:2.53 TPM:2.78
2177 A_BomoFB_comp10426_c0_seq1
1493bp
 putative_Lysosomal_Pro-X_carboxypeptidase_[Danaus_plexippus]
GO:0004180 F carboxypeptidase activity
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
FPKM:80.69 TPM:88.41
2178 A_BomoFB_comp10426_c1_seq1
3428bp
 PREDICTED:_FK506-binding_protein_59-like_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005515 F protein binding
GO:0005528 F FK506 binding
GO:0005789 C endoplasmic reticulum membrane
GO:0006457 P protein folding
GO:0007422 P peripheral nervous system development
GO:0007601 P visual perception
GO:0008152 P metabolic process
GO:0016027 C inaD signaling complex
GO:0016853 F isomerase activity
GO:0050896 P response to stimulus
GO:0050908 P detection of light stimulus involved in visual perception
GO:0051924 P regulation of calcium ion transport
GO:0061077 P chaperone-mediated protein folding
FPKM:17.87 TPM:19.58
2179 A_BomoFB_comp104271_c0_seq1
1650bp
 MOF_protein_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0000776 C kinetochore
GO:0004402 F histone acetyltransferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0010506 P regulation of autophagy
GO:0016407 F acetyltransferase activity
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0019899 F enzyme binding
GO:0030099 P myeloid cell differentiation
GO:0035064 F methylated histone binding
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
GO:0071339 C MLL1 complex
GO:0072487 C MSL complex
FPKM:2.96 TPM:3.24
2180 A_BomoFB_comp104273_c0_seq1
318bp
 PREDICTED:_probable_beta-hexosaminidase_fdl_[Amyelois_transitella]
FPKM:4.79 TPM:5.25
2181 A_BomoFB_comp10427_c0_seq1
294bp
FPKM:0.96 TPM:1.06
2182 A_BomoFB_comp10427_c0_seq2
1107bp
FPKM:0.00 TPM:0.00
2183 A_BomoFB_comp10427_c0_seq3
298bp
FPKM:0.47 TPM:0.51
2184 A_BomoFB_comp10427_c0_seq4
366bp
FPKM:0.00 TPM:0.00
2185 A_BomoFB_comp10427_c0_seq5
1045bp
FPKM:4.53 TPM:4.97
2186 A_BomoFB_comp104286_c0_seq1
2505bp
 PREDICTED:_myosin-VIIa_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007605 P sensory perception of sound
GO:0008152 P metabolic process
GO:0008407 P chaeta morphogenesis
GO:0016459 C myosin complex
GO:0030048 P actin filament-based movement
GO:0030898 F microfilament motor activity
GO:0032027 F myosin light chain binding
GO:0035317 P imaginal disc-derived wing hair organization
GO:0048800 P antennal morphogenesis
FPKM:3.32 TPM:3.64
2187 A_BomoFB_comp10428_c0_seq1
238bp
 unnamed_protein_product_[Oikopleura_dioica]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
FPKM:1999.10 TPM:2190.46
2188 A_BomoFB_comp104291_c0_seq1
685bp
FPKM:2.49 TPM:2.73
2189 A_BomoFB_comp104297_c0_seq1
1793bp
 PREDICTED:_putative_DNA_helicase_Ino80_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0000975 F transcription cis-regulatory region binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031011 C Ino80 complex
GO:0032508 P DNA duplex unwinding
GO:0040034 P regulation of development, heterochronic
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:2.66 TPM:2.92
2190 A_BomoFB_comp10429_c0_seq1
540bp
FPKM:2.31 TPM:2.53
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