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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1111 A_BomoFB_comp10277_c0_seq3
352bp
FPKM:1.28 TPM:1.40
1112 A_BomoFB_comp10277_c0_seq4
476bp
FPKM:7.60 TPM:8.32
1113 A_BomoFB_comp10278_c0_seq1
1455bp
 PREDICTED:_probable_phenylalanine--tRNA_ligase,_mitochondrial_[Papilio_machaon]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0008033 P tRNA processing
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
FPKM:5.59 TPM:6.13
1114 A_BomoFB_comp10279_c0_seq1
2772bp
 PREDICTED:_calsyntenin-1-like,_partial_[Amyelois_transitella]
FPKM:13.00 TPM:14.25
1115 A_BomoFB_comp10279_c0_seq2
470bp
FPKM:4.92 TPM:5.39
1116 A_BomoFB_comp1028003_c0_seq1
204bp
 hypothetical_protein_[Streptomyces_acidiscabies]
FPKM:1.66 TPM:1.82
1117 A_BomoFB_comp10280_c0_seq1
2066bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
FPKM:0.09 TPM:0.10
1118 A_BomoFB_comp10280_c0_seq2
1179bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
FPKM:1.99 TPM:2.19
1119 A_BomoFB_comp10280_c0_seq3
2109bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
FPKM:2.66 TPM:2.91
1120 A_BomoFB_comp10280_c0_seq4
2150bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
FPKM:0.40 TPM:0.44
1121 A_BomoFB_comp10280_c0_seq5
1877bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
FPKM:1.35 TPM:1.48
1122 A_BomoFB_comp10280_c0_seq6
559bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
FPKM:1.46 TPM:1.60
1123 A_BomoFB_comp10280_c0_seq7
1138bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
FPKM:5.95 TPM:6.52
1124 A_BomoFB_comp10280_c0_seq8
631bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
FPKM:0.30 TPM:0.32
1125 A_BomoFB_comp10280_c0_seq9
1095bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
FPKM:7.81 TPM:8.56
1126 A_BomoFB_comp10281_c0_seq1
962bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009720 P detection of hormone stimulus
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010887 P negative regulation of cholesterol storage
GO:0010888 P negative regulation of lipid storage
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055037 C recycling endosome
GO:0055085 P transmembrane transport
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:9.74 TPM:10.68
1127 A_BomoFB_comp10281_c0_seq2
924bp
 ATP-binding_cassette_sub-family_G_member_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:7.34 TPM:8.04
1128 A_BomoFB_comp10281_c1_seq1
3788bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0033344 P cholesterol efflux
GO:0034041 F ABC-type sterol transporter activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0055085 P transmembrane transport
FPKM:9.58 TPM:10.50
1129 A_BomoFB_comp10281_c1_seq2
1743bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:65.38 TPM:71.64
1130 A_BomoFB_comp10281_c1_seq3
1414bp
 PREDICTED:_BTB/POZ_domain-containing_protein_KCTD1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0051260 P protein homooligomerization
FPKM:97.20 TPM:106.51
1131 A_BomoFB_comp10281_c1_seq4
1406bp
 uricase_[Bombyx_mori]
GO:0004846 F urate oxidase activity
GO:0005777 C peroxisome
GO:0006144 P purine nucleobase metabolic process
GO:0016491 F oxidoreductase activity
GO:0019628 P urate catabolic process
GO:0055114 P obsolete oxidation-reduction process
FPKM:131.21 TPM:143.77
1132 A_BomoFB_comp10282_c0_seq1
2512bp
 PREDICTED:_exosome_complex_exonuclease_RRP44_isoform_X1_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043547 P positive regulation of GTPase activity
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:8.16 TPM:8.94
1133 A_BomoFB_comp10282_c0_seq2
1181bp
 PREDICTED:_exosome_complex_exonuclease_RRP44_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043547 P positive regulation of GTPase activity
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:2.56 TPM:2.80
1134 A_BomoFB_comp10283_c0_seq1
4269bp
 PREDICTED:_inhibitor_of_Bruton_tyrosine_kinase_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0016020 C membrane
FPKM:13.13 TPM:14.38
1135 A_BomoFB_comp102844_c0_seq1
1067bp
 PREDICTED:_uncharacterized_protein_DDB_G0286591_[Bombyx_mori]
FPKM:3.56 TPM:3.90
1136 A_BomoFB_comp10284_c0_seq1
1994bp
FPKM:4.06 TPM:4.45
1137 A_BomoFB_comp10284_c0_seq2
4605bp
FPKM:10.33 TPM:11.32
1138 A_BomoFB_comp10284_c0_seq3
552bp
FPKM:0.00 TPM:0.00
1139 A_BomoFB_comp10285_c0_seq1
466bp
FPKM:6.31 TPM:6.91
1140 A_BomoFB_comp10285_c0_seq2
501bp
FPKM:1.21 TPM:1.33
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