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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

1051

A_BomoFB_comp10263_c0_seq2

2467bp

Bomo_Chr4

PREDICTED:_aromatic-L-amino-acid_decarboxylase_isoform_X1_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0004058	F	aromatic-L-amino-acid decarboxylase activity
GO:0006520	P	cellular amino acid metabolic process
GO:0016829	F	lyase activity
GO:0016831	F	carboxy-lyase activity
GO:0019752	P	carboxylic acid metabolic process
GO:0030170	F	pyridoxal phosphate binding
GO:0042423	P	catecholamine biosynthetic process

FPKM:11.54 TPM:12.65

1052

A_BomoFB_comp10263_c0_seq3

5260bp

Bomo_Chr4

PREDICTED:_uncharacterized_protein_LOC106129409_[Amyelois_transitella]

FPKM:0.00 TPM:0.00

1053

A_BomoFB_comp10263_c0_seq4

5912bp

Bomo_Chr4

PREDICTED:_aromatic-L-amino-acid_decarboxylase_isoform_X1_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0004058	F	aromatic-L-amino-acid decarboxylase activity
GO:0006520	P	cellular amino acid metabolic process
GO:0016829	F	lyase activity
GO:0016831	F	carboxy-lyase activity
GO:0019752	P	carboxylic acid metabolic process
GO:0030170	F	pyridoxal phosphate binding
GO:0042423	P	catecholamine biosynthetic process

FPKM:9.52 TPM:10.43

1054

A_BomoFB_comp102644_c0_seq1

810bp

Bomo_Chr8

exosome_complex_exonuclease_Rrp40_[Bombyx_mori]

GO:0000176	C	nuclear exosome (RNase complex)
GO:0000177	C	cytoplasmic exosome (RNase complex)
GO:0000178	C	exosome (RNase complex)
GO:0000467	P	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723	F	RNA binding
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0005737	C	cytoplasm
GO:0006364	P	rRNA processing
GO:0034427	P	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475	P	U4 snRNA 3'-end processing
GO:0035327	C	euchromatin
GO:0043928	P	exonucleolytic catabolism of deadenylated mRNA
GO:0045006	P	DNA deamination
GO:0045190	P	isotype switching
GO:0045830	P	positive regulation of isotype switching
GO:0071034	P	CUT catabolic process
GO:0071035	P	nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038	P	nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049	P	nuclear mRNA surveillance
GO:0071051	P	polyadenylation-dependent snoRNA 3'-end processing

FPKM:5.02 TPM:5.50

1055

A_BomoFB_comp102647_c0_seq1

689bp

Bomo_Chr9

Mitotic_checkpoint_serine/threonine-protein_kinase_BUB1_[Papilio_xuthus]

GO:0000166	F	nucleotide binding
GO:0000775	C	chromosome, centromeric region
GO:0000776	C	kinetochore
GO:0000777	C	kinetochore
GO:0000780	C	condensed chromosome, centromeric region
GO:0000942	C	outer kinetochore
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005694	C	chromosome
GO:0005737	C	cytoplasm
GO:0006468	P	protein phosphorylation
GO:0006915	P	apoptotic process
GO:0007049	P	cell cycle
GO:0007059	P	chromosome segregation
GO:0007063	P	regulation of sister chromatid cohesion
GO:0007067	P	mitotic cell cycle
GO:0007094	P	mitotic spindle assembly checkpoint signaling
GO:0009790	P	embryo development
GO:0016020	C	membrane
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0051301	P	cell division
GO:0051983	P	regulation of chromosome segregation
GO:0071173	P	spindle assembly checkpoint signaling
GO:2001244	P	positive regulation of intrinsic apoptotic signaling pathway

FPKM:3.22 TPM:3.53

1056

A_BomoFB_comp10264_c0_seq1

1732bp

Bomo_Scaf143

PREDICTED:_uncharacterized_protein_LOC101742687_isoform_X2_[Bombyx_mori]

GO:0004842	F	ubiquitin-protein transferase activity
GO:0005764	C	lysosome
GO:0005765	C	lysosomal membrane
GO:0005768	C	endosome
GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0006897	P	endocytosis
GO:0008270	F	zinc ion binding
GO:0010008	C	endosome membrane
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016567	P	protein ubiquitination
GO:0016874	F	ligase activity
GO:0031410	C	cytoplasmic vesicle
GO:0046872	F	metal ion binding

FPKM:20.42 TPM:22.37

1057

A_BomoFB_comp10264_c0_seq2

1201bp

Bomo_Scaf502

PREDICTED:_uncharacterized_protein_LOC101742687_isoform_X2_[Bombyx_mori]

GO:0004842	F	ubiquitin-protein transferase activity
GO:0005764	C	lysosome
GO:0005765	C	lysosomal membrane
GO:0005768	C	endosome
GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0006897	P	endocytosis
GO:0008270	F	zinc ion binding
GO:0010008	C	endosome membrane
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016567	P	protein ubiquitination
GO:0016874	F	ligase activity
GO:0031410	C	cytoplasmic vesicle
GO:0046872	F	metal ion binding

FPKM:47.38 TPM:51.92

1058

A_BomoFB_comp10265_c0_seq1

1011bp

Bomo_Chr10

PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]

GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005844	C	polysome
GO:0006417	P	regulation of translation
GO:0016020	C	membrane
GO:0019887	F	protein kinase regulator activity
GO:0019901	F	protein kinase binding
GO:0033554	P	cellular response to stress
GO:0033674	P	positive regulation of kinase activity
GO:0034198	P	cellular response to amino acid starvation
GO:0036003	P	positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022	F	ribosome binding
GO:0044822	F	RNA binding
GO:0045859	P	regulation of protein kinase activity
GO:1990253	P	cellular response to leucine starvation

FPKM:6.75 TPM:7.40

1059

A_BomoFB_comp102666_c0_seq1

2164bp

Bomo_Chr24

Uncharacterized_protein_OBRU01_16110,_partial_[Operophtera_brumata]

FPKM:2.71 TPM:2.97

1060

A_BomoFB_comp10266_c0_seq1

716bp

Bomo_Chr4

PREDICTED:_uncharacterized_protein_LOC101735657_isoform_X3_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005215	F	transporter activity
GO:0005622	C	intracellular anatomical structure
GO:0006810	P	transport
GO:0008150	P	biological_process
GO:0016020	C	membrane

FPKM:2.41 TPM:2.65

1061

A_BomoFB_comp10266_c0_seq2

675bp

Bomo_Chr4

PREDICTED:_uncharacterized_protein_LOC101735657_isoform_X3_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005215	F	transporter activity
GO:0005622	C	intracellular anatomical structure
GO:0006810	P	transport
GO:0008150	P	biological_process
GO:0016020	C	membrane

FPKM:0.00 TPM:0.00

1062

A_BomoFB_comp10266_c0_seq3

982bp

Bomo_Chr4

PREDICTED:_alpha-tocopherol_transfer_protein-like_isoform_X1_[Bombyx_mori]

GO:0005215	F	transporter activity
GO:0005622	C	intracellular anatomical structure
GO:0006810	P	transport
GO:0016020	C	membrane

FPKM:2.71 TPM:2.97

1063

A_BomoFB_comp10266_c0_seq4

1023bp

Bomo_Chr4

PREDICTED:_alpha-tocopherol_transfer_protein-like_isoform_X1_[Bombyx_mori]

GO:0005215	F	transporter activity
GO:0005622	C	intracellular anatomical structure
GO:0006810	P	transport
GO:0016020	C	membrane

FPKM:3.91 TPM:4.28

1064

A_BomoFB_comp10267_c0_seq1

248bp

Bomo_Chr15

DNA_strand_exchange_inhibitor_protein_[Bacillus_licheniformis]

FPKM:1.57 TPM:1.72

1065

A_BomoFB_comp10267_c1_seq1

1577bp

Bomo_Scaf004

PREDICTED:_uncharacterized_protein_LOC106143484_[Amyelois_transitella]

FPKM:1.73 TPM:1.90

1066

A_BomoFB_comp10267_c1_seq2

1390bp

Bomo_Chr14

FPKM:0.58 TPM:0.64

1067

A_BomoFB_comp10267_c1_seq3

2333bp

Bomo_Scaf382

ornithine_decarboxylase_antizyme_[Bombyx_mori]

FPKM:5.49 TPM:6.02

1068

A_BomoFB_comp10267_c1_seq4

288bp

Bomo_Chr13

hypothetical_protein_[Listeria_aquatica]

FPKM:3.56 TPM:3.90

1069

A_BomoFB_comp10267_c1_seq5

649bp

Bomo_Chr13

ornithine_decarboxylase_antizyme_[Bombyx_mori]

FPKM:5.13 TPM:5.62

1070

A_BomoFB_comp102681_c0_seq1

316bp

Bomo_Chr23

PREDICTED:_zinc_finger_C4H2_domain-containing_protein_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005886	C	plasma membrane
GO:0007275	P	multicellular organism development
GO:0007399	P	nervous system development
GO:0007528	P	neuromuscular junction development
GO:0016020	C	membrane
GO:0021522	P	spinal cord motor neuron differentiation
GO:0030054	C	cell junction
GO:0045202	C	synapse
GO:0045211	C	postsynaptic membrane
GO:0046872	F	metal ion binding

FPKM:2.84 TPM:3.11

1071

A_BomoFB_comp10268_c0_seq1

3079bp

Bomo_Chr14

PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X7_[Bombyx_mori]

GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0007286	P	spermatid development
GO:0007399	P	nervous system development
GO:0007420	P	brain development
GO:0016514	C	SWI/SNF complex
GO:0016568	P	chromatin organization
GO:0043044	P	chromatin remodeling
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0047485	F	protein N-terminus binding

FPKM:0.53 TPM:0.58

1072

A_BomoFB_comp10268_c0_seq2

265bp

Bomo_Chr14

PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X7_[Bombyx_mori]

FPKM:1.43 TPM:1.57

1073

A_BomoFB_comp10268_c0_seq3

950bp

Bomo_Chr14

PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X3_[Bombyx_mori]

GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0007286	P	spermatid development
GO:0007399	P	nervous system development
GO:0007420	P	brain development
GO:0016514	C	SWI/SNF complex
GO:0016568	P	chromatin organization
GO:0043044	P	chromatin remodeling
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0047485	F	protein N-terminus binding

FPKM:1.57 TPM:1.73

1074

A_BomoFB_comp10268_c0_seq4

497bp

Bomo_Chr14

hypothetical_protein_KGM_12870_[Danaus_plexippus]

FPKM:1.37 TPM:1.50

1075

A_BomoFB_comp10268_c0_seq5

3185bp

Bomo_Chr14

PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X4_[Bombyx_mori]

GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0007286	P	spermatid development
GO:0007399	P	nervous system development
GO:0007420	P	brain development
GO:0016514	C	SWI/SNF complex
GO:0016568	P	chromatin organization
GO:0043044	P	chromatin remodeling
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0047485	F	protein N-terminus binding

FPKM:0.00 TPM:0.00

1076

A_BomoFB_comp10268_c0_seq6

3638bp

Bomo_Chr14

PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X4_[Bombyx_mori]

GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0007286	P	spermatid development
GO:0007399	P	nervous system development
GO:0007420	P	brain development
GO:0016514	C	SWI/SNF complex
GO:0016568	P	chromatin organization
GO:0043044	P	chromatin remodeling
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0047485	F	protein N-terminus binding