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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
811 A_BomaMG_comp11186_c0_seq1
587bp
PREDICTED:_TATA_element_modulatory_factor_isoform_X2_[Bombyx_mori]
FPKM:3.93 TPM:3.64
812 A_BomaMG_comp111875_c0_seq1
391bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_8-like_[Bombyx_mori]
FPKM:4.69 TPM:4.34
813 A_BomaMG_comp11187_c0_seq1
250bp
FPKM:0.93 TPM:0.86
814 A_BomaMG_comp11188_c0_seq1
506bp
FPKM:3.45 TPM:3.19
815 A_BomaMG_comp11189_c0_seq1
859bp
PREDICTED:_uncharacterized_protein_LOC101737053_[Bombyx_mori]
FPKM:4.00 TPM:3.70
816 A_BomaMG_comp1118_c0_seq1
957bp
PREDICTED:_uncharacterized_protein_LOC105842796,_partial_[Bombyx_mori]
FPKM:1.05 TPM:0.97
817 A_BomaMG_comp11190_c0_seq1
322bp
FPKM:1.44 TPM:1.33
818 A_BomaMG_comp11191_c0_seq1
1796bp
putative_tumor_suppressor_protein,_partial_[Operophtera_brumata]
GO:0000010 F trans-hexaprenyltranstransferase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006744 P ubiquinone biosynthetic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0046982 F protein heterodimerization activity
GO:0050347 F trans-octaprenyltranstransferase activity
GO:0050878 P regulation of body fluid levels
GO:0051290 P protein heterotetramerization
GO:1990234 C transferase complex
FPKM:0.57 TPM:0.53
819 A_BomaMG_comp11191_c0_seq2
2191bp
putative_tumor_suppressor_protein,_partial_[Operophtera_brumata]
GO:0000010 F trans-hexaprenyltranstransferase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006744 P ubiquinone biosynthetic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0046982 F protein heterodimerization activity
GO:0050347 F trans-octaprenyltranstransferase activity
GO:0050878 P regulation of body fluid levels
GO:0051290 P protein heterotetramerization
GO:1990234 C transferase complex
FPKM:3.09 TPM:2.86
820 A_BomaMG_comp111927_c0_seq1
1415bp
FPKM:2.39 TPM:2.21
821 A_BomaMG_comp11192_c0_seq1
1681bp
PREDICTED:_HEAT_repeat-containing_protein_5B_[Bombyx_mori]
FPKM:3.88 TPM:3.59
822 A_BomaMG_comp11193_c0_seq1
1867bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_sidekick_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042675 P compound eye cone cell differentiation
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0050931 P pigment cell differentiation
GO:0098595 C perivitelline space
FPKM:3.81 TPM:3.53
823 A_BomaMG_comp11195_c0_seq1
227bp
FPKM:8.37 TPM:7.75
824 A_BomaMG_comp11196_c0_seq1
239bp
toxin-antitoxin_system,_toxin_component,_HicA_family_[Veillonella_atypica_ACS-049-V-Sch6]
FPKM:3.23 TPM:2.99
825 A_BomaMG_comp11198_c0_seq1
1214bp
PREDICTED:_uncharacterized_protein_LOC106122376_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
FPKM:4.62 TPM:4.28
826 A_BomaMG_comp11200_c0_seq1
614bp
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
FPKM:3.52 TPM:3.26
827 A_BomaMG_comp11202_c0_seq1
258bp
hypothetical_protein_[Marinitoga_sp._1155]
FPKM:2.11 TPM:1.96
828 A_BomaMG_comp112054_c0_seq1
356bp
FPKM:2.13 TPM:1.98
829 A_BomaMG_comp11205_c0_seq1
1260bp
PREDICTED:_protein_FAM50_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
FPKM:3.83 TPM:3.54
830 A_BomaMG_comp11208_c0_seq1
1707bp
putative_U3_small_nucleolar_RNA-associated_protein_[Danaus_plexippus]
GO:0001650 C fibrillar center
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0030054 C cell junction
GO:0044822 F RNA binding
FPKM:4.12 TPM:3.82
831 A_BomaMG_comp1120_c0_seq1
305bp
PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:1.90 TPM:1.76
832 A_BomaMG_comp11210_c0_seq1
554bp
FPKM:4.19 TPM:3.88
833 A_BomaMG_comp11211_c0_seq1
1976bp
PREDICTED:_cystathionine_beta-synthase-like_[Bombyx_mori]
GO:0001887 P selenium compound metabolic process
GO:0001958 P endochondral ossification
GO:0001974 P blood vessel remodeling
GO:0004122 F cystathionine beta-synthase activity
GO:0004124 F cysteine synthase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006535 P cysteine biosynthetic process from serine
GO:0006563 P L-serine metabolic process
GO:0006801 P superoxide metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016829 F lyase activity
GO:0019343 P cysteine biosynthetic process via cystathionine
GO:0019344 P cysteine biosynthetic process
GO:0019346 P transsulfuration
GO:0020037 F heme binding
GO:0021587 P cerebellum morphogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0030823 P obsolete regulation of cGMP metabolic process
GO:0031667 P response to nutrient levels
GO:0042803 F protein homodimerization activity
GO:0043066 P negative regulation of apoptotic process
GO:0043418 P homocysteine catabolic process
GO:0043506 P regulation of JUN kinase activity
GO:0046872 F metal ion binding
GO:0050667 P homocysteine metabolic process
GO:0050880 P blood vessel diameter maintenance
GO:0051593 P response to folic acid
GO:0060135 P maternal process involved in female pregnancy
GO:0060351 P cartilage development involved in endochondral bone morphogenesis
GO:0070814 P hydrogen sulfide biosynthetic process
GO:0071456 P cellular response to hypoxia
GO:0098605 F selenocystathionine beta-synthase activity
FPKM:4.09 TPM:3.79
834 A_BomaMG_comp11212_c0_seq1
250bp
acetyl_CoA_synthetase_subunit_alpha_[Mastigocladus_laminosus]
FPKM:1.86 TPM:1.72
835 A_BomaMG_comp11214_c0_seq1
671bp
PREDICTED:_microsomal_triglyceride_transfer_protein_large_subunit-like_[Bombyx_mori]
GO:0005319 F lipid transporter activity
GO:0005548 F phospholipid transporter activity
GO:0005783 C endoplasmic reticulum
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008289 F lipid binding
GO:0015914 P phospholipid transport
GO:0034197 P triglyceride transport
GO:0034377 P plasma lipoprotein particle assembly
GO:0046982 F protein heterodimerization activity
FPKM:4.77 TPM:4.42
836 A_BomaMG_comp11215_c0_seq1
2334bp
syntaxin_6_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005484 F SNAP receptor activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0048193 P Golgi vesicle transport
GO:0061025 P membrane fusion
FPKM:2.84 TPM:2.63
837 A_BomaMG_comp11215_c0_seq2
2069bp
syntaxin_6_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005484 F SNAP receptor activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0048193 P Golgi vesicle transport
GO:0061025 P membrane fusion
FPKM:0.46 TPM:0.42
838 A_BomaMG_comp11216_c0_seq1
395bp
olfactory_receptor_[Bombyx_mori]
FPKM:1.11 TPM:1.03
839 A_BomaMG_comp112186_c0_seq1
657bp
PREDICTED:_zinc_finger_MYM-type_protein_4_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007010 P cytoskeleton organization
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0022604 P regulation of cell morphogenesis
GO:0046872 F metal ion binding
FPKM:3.70 TPM:3.43
840 A_BomaMG_comp11218_c0_seq1
3096bp
PREDICTED:_DNA-directed_RNA_polymerase_III_subunit_RPC1_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
FPKM:3.46 TPM:3.20
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