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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
751 A_BomaMG_comp11133_c0_seq1
1999bp
FPKM:2.94 TPM:2.72
752 A_BomaMG_comp11134_c0_seq1
881bp
PREDICTED:_LOW_QUALITY_PROTEIN:_helicase_domino_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0002165 P instar larval or pupal development
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007275 P multicellular organism development
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008283 P cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016787 F hydrolase activity
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0030097 P hemopoiesis
GO:0030154 P cell differentiation
GO:0035019 P somatic stem cell population maintenance
GO:0035207 P negative regulation of hemocyte proliferation
GO:0035222 P wing disc pattern formation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0036098 P male germ-line stem cell population maintenance
GO:0043486 P histone exchange
GO:0045747 P positive regulation of Notch signaling pathway
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0070983 P dendrite guidance
GO:2000637 P positive regulation of gene silencing by miRNA
FPKM:4.36 TPM:4.03
753 A_BomaMG_comp11135_c0_seq1
1356bp
PREDICTED:_cell_cycle_checkpoint_control_protein_RAD9A_[Amyelois_transitella]
GO:0000075 P cell cycle checkpoint signaling
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0030896 C checkpoint clamp complex
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0042826 F histone deacetylase binding
GO:0071479 P cellular response to ionizing radiation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1902231 P positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage
FPKM:4.64 TPM:4.29
754 A_BomaMG_comp11136_c0_seq1
2346bp
PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002039 F p53 binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007155 P cell adhesion
GO:0015630 C microtubule cytoskeleton
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030155 P regulation of cell adhesion
GO:0035507 P regulation of myosin-light-chain-phosphatase activity
GO:0035556 P intracellular signal transduction
GO:0042127 P regulation of cell population proliferation
GO:0046872 F metal ion binding
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:2000772 P regulation of cellular senescence
FPKM:2.82 TPM:2.61
755 A_BomaMG_comp11136_c0_seq2
788bp
PREDICTED:_LOW_QUALITY_PROTEIN:_treacle_protein_[Bombyx_mori]
FPKM:0.76 TPM:0.70
756 A_BomaMG_comp11137_c0_seq1
2190bp
PREDICTED:_homeobox_protein_5_isoform_X2_[Bombyx_mori]
GO:0046872 F metal ion binding
FPKM:3.67 TPM:3.40
757 A_BomaMG_comp11138_c0_seq1
689bp
Tankyrase-1_[Papilio_xuthus]
GO:0003950 F NAD+ ADP-ribosyltransferase activity
GO:0005515 F protein binding
GO:0006471 P protein ADP-ribosylation
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0022416 P chaeta development
GO:0035220 P wing disc development
GO:0046872 F metal ion binding
GO:0090364 P regulation of proteasome assembly
GO:0097110 F scaffold protein binding
FPKM:4.94 TPM:4.57
758 A_BomaMG_comp11139_c0_seq1
680bp
heat_shock_protein_hsp20.8_[Bombyx_mori]
GO:0006497 P protein lipidation
GO:0007275 P multicellular organism development
GO:0010506 P regulation of autophagy
GO:0010998 P regulation of translational initiation by eIF2 alpha phosphorylation
FPKM:3.81 TPM:3.52
759 A_BomaMG_comp1113_c0_seq1
733bp
FPKM:1.04 TPM:0.97
760 A_BomaMG_comp1113_c1_seq1
226bp
FPKM:1.96 TPM:1.82
761 A_BomaMG_comp11141_c0_seq1
1927bp
PREDICTED:_protein_pigeon_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.07 TPM:2.84
762 A_BomaMG_comp11141_c0_seq2
1775bp
PREDICTED:_protein_pigeon_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:0.67 TPM:0.62
763 A_BomaMG_comp11142_c0_seq1
465bp
FPKM:4.54 TPM:4.21
764 A_BomaMG_comp11143_c0_seq1
1347bp
PREDICTED:_cleavage_stimulation_factor_subunit_2_tau_variant_isoform_X2_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
GO:0071920 C cleavage body
GO:0098789 P pre-mRNA cleavage required for polyadenylation
FPKM:4.67 TPM:4.33
765 A_BomaMG_comp11144_c0_seq1
324bp
FPKM:2.84 TPM:2.63
766 A_BomaMG_comp11144_c1_seq1
1532bp
PREDICTED:_B-cell_CLL/lymphoma_7_protein_family_member_A_[Papilio_xuthus]
GO:0006915 P apoptotic process
GO:0016055 P Wnt signaling pathway
GO:0030154 P cell differentiation
FPKM:3.43 TPM:3.18
767 A_BomaMG_comp11145_c0_seq1
1749bp
PREDICTED:_C2_domain-containing_protein_5_isoform_X2_[Amyelois_transitella]
GO:0001726 C ruffle
GO:0005509 F calcium ion binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006810 P transport
GO:0006906 P vesicle fusion
GO:0008289 F lipid binding
GO:0010828 P positive regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031340 P positive regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0032587 C ruffle membrane
GO:0032869 P cellular response to insulin stimulus
GO:0038028 P insulin receptor signaling pathway via phosphatidylinositol 3-kinase
GO:0042995 C cell projection
GO:0065002 P intracellular protein transmembrane transport
GO:0072659 P protein localization to plasma membrane
GO:0090314 P positive regulation of protein targeting to membrane
GO:2001275 P obsolete positive regulation of glucose import in response to insulin stimulus
FPKM:2.76 TPM:2.56
768 A_BomaMG_comp11146_c0_seq1
1443bp
PREDICTED:_histone_deacetylase_6_isoform_X1_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0014003 P oligodendrocyte development
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0019899 F enzyme binding
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0033558 F protein deacetylase activity
GO:0042826 F histone deacetylase binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070932 P histone H3 deacetylation
FPKM:3.16 TPM:2.93
769 A_BomaMG_comp11148_c0_seq1
574bp
FPKM:3.28 TPM:3.04
770 A_BomaMG_comp111499_c0_seq1
468bp
FPKM:2.03 TPM:1.88
771 A_BomaMG_comp11149_c0_seq1
311bp
FPKM:1.82 TPM:1.68
772 A_BomaMG_comp11149_c1_seq1
217bp
FPKM:0.00 TPM:0.00
773 A_BomaMG_comp1114_c0_seq1
219bp
FPKM:0.00 TPM:0.00
774 A_BomaMG_comp11150_c0_seq1
469bp
PREDICTED:_vinculin_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005925 C focal adhesion
GO:0006909 P phagocytosis
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0048812 P neuron projection morphogenesis
GO:0051015 F actin filament binding
FPKM:6.49 TPM:6.01
775 A_BomaMG_comp11151_c0_seq1
1150bp
PREDICTED:_THO_complex_subunit_6_[Papilio_machaon]
GO:0000347 C THO complex
GO:0003674 F molecular_function
GO:0006406 P mRNA export from nucleus
GO:0008283 P cell population proliferation
GO:0009408 P response to heat
FPKM:4.44 TPM:4.11
776 A_BomaMG_comp11152_c0_seq1
378bp
U6_snRNA-associated_Sm-like_protein_LSm2_[Operophtera_brumata]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006402 P mRNA catabolic process
GO:0008380 P RNA splicing
GO:0017160 F small GTPase binding
GO:0019901 F protein kinase binding
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
FPKM:6.72 TPM:6.23
777 A_BomaMG_comp11153_c0_seq1
395bp
FPKM:4.92 TPM:4.56
778 A_BomaMG_comp11153_c1_seq1
610bp
FPKM:3.64 TPM:3.37
779 A_BomaMG_comp11154_c0_seq1
446bp
PREDICTED:_DPH3_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0017183 P peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO:0046872 F metal ion binding
FPKM:6.28 TPM:5.82
780 A_BomaMG_comp11155_c0_seq1
336bp
PIN-like_protein,_partial_[Podophyllum_peltatum]
FPKM:2.62 TPM:2.43
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