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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
721 A_BomaMG_comp11110_c0_seq1
330bp
FPKM:2.27 TPM:2.10
722 A_BomaMG_comp11111_c0_seq1
672bp
ring_and_YY1_binding_protein_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.84 TPM:1.70
723 A_BomaMG_comp11111_c0_seq2
360bp
PREDICTED:_YY1-associated_factor_2_[Amyelois_transitella]
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.16 TPM:2.00
724 A_BomaMG_comp11112_c0_seq1
287bp
FPKM:3.16 TPM:2.92
725 A_BomaMG_comp111145_c0_seq1
759bp
PREDICTED:_enhancer_of_mRNA-decapping_protein_4_homolog_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0033962 P P-body assembly
GO:0035195 P gene silencing by miRNA
GO:0045451 P pole plasm oskar mRNA localization
GO:0050832 P defense response to fungus
FPKM:3.52 TPM:3.26
726 A_BomaMG_comp11115_c0_seq1
715bp
FPKM:2.73 TPM:2.53
727 A_BomaMG_comp11115_c0_seq2
748bp
FPKM:0.84 TPM:0.77
728 A_BomaMG_comp111163_c0_seq1
2280bp
PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1-A_isoform_X1_[Amyelois_transitella]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008285 P negative regulation of cell population proliferation
GO:0030154 P cell differentiation
GO:0043044 P chromatin remodeling
GO:0090544 C SWI/SNF superfamily-type complex
FPKM:2.55 TPM:2.36
729 A_BomaMG_comp111168_c0_seq1
329bp
PREDICTED:_LOW_QUALITY_PROTEIN:_NSFL1_cofactor_p47_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007030 P Golgi organization
GO:0008289 F lipid binding
GO:0031468 P nuclear membrane reassembly
GO:0043130 F ubiquitin binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045111 C intermediate filament cytoskeleton
GO:0061025 P membrane fusion
FPKM:7.09 TPM:6.57
730 A_BomaMG_comp11117_c0_seq1
1919bp
PREDICTED:_altered_inheritance_of_mitochondria_protein_21_isoform_X1_[Bombyx_mori]
GO:0000900 F translation repressor activity, mRNA regulatory element binding
GO:0005575 C cellular_component
GO:0006417 P regulation of translation
GO:0008143 F poly(A) binding
GO:0017148 P negative regulation of translation
GO:0045947 P negative regulation of translational initiation
FPKM:3.82 TPM:3.53
731 A_BomaMG_comp1111_c0_seq1
247bp
FPKM:1.93 TPM:1.79
732 A_BomaMG_comp11120_c0_seq1
757bp
PREDICTED:_brahma-associated_protein_of_60_kDa_[Amyelois_transitella]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0010628 P positive regulation of gene expression
GO:0017022 F myosin binding
GO:0031453 P positive regulation of heterochromatin assembly
GO:0035060 C brahma complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0070604 C RSC-type complex
FPKM:5.24 TPM:4.85
733 A_BomaMG_comp11121_c0_seq1
1171bp
PREDICTED:_bifunctional_methylenetetrahydrofolate_dehydrogenase/cyclohydrolase,_mitochondrial_isoform_X1_[Papilio_machaon]
GO:0000105 P histidine biosynthetic process
GO:0003824 F catalytic activity
GO:0004477 F methenyltetrahydrofolate cyclohydrolase activity
GO:0004487 F methylenetetrahydrofolate dehydrogenase (NAD+) activity
GO:0004488 F methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006164 P purine nucleotide biosynthetic process
GO:0006730 P one-carbon metabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0009396 P folic acid-containing compound biosynthetic process
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016787 F hydrolase activity
GO:0035999 P tetrahydrofolate interconversion
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.38 TPM:4.05
734 A_BomaMG_comp11122_c0_seq1
276bp
FPKM:6.64 TPM:6.15
735 A_BomaMG_comp11123_c0_seq1
1275bp
PREDICTED:_ras-related_protein_Rab-31-like_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031623 P receptor internalization
GO:0032588 C trans-Golgi network membrane
GO:0032869 P cellular response to insulin stimulus
GO:0043001 P Golgi to plasma membrane protein transport
GO:0045055 P regulated exocytosis
GO:0045335 C phagocytic vesicle
GO:0048193 P Golgi vesicle transport
GO:0090382 P phagosome maturation
FPKM:4.36 TPM:4.04
736 A_BomaMG_comp111244_c0_seq1
529bp
PREDICTED:_ATP-binding_cassette_sub-family_A_member_3-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097233 C alveolar lamellar body membrane
FPKM:3.22 TPM:2.98
737 A_BomaMG_comp11124_c0_seq1
815bp
PREDICTED:_probable_DNA_replication_complex_GINS_protein_PSF2_[Amyelois_transitella]
GO:0000727 P double-strand break repair via break-induced replication
GO:0000811 C GINS complex
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0022008 P neurogenesis
GO:0030261 P chromosome condensation
GO:0031298 C replication fork protection complex
GO:0032508 P DNA duplex unwinding
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0043138 F 3'-5' DNA helicase activity
GO:0046331 P lateral inhibition
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1902975 P mitotic DNA replication initiation
FPKM:4.38 TPM:4.06
738 A_BomaMG_comp11125_c0_seq1
1425bp
116_kDa_U5_small_nuclear_ribonucleoprotein_component_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006412 P translation
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:3.35 TPM:3.10
739 A_BomaMG_comp111267_c0_seq1
496bp
PREDICTED:_putative_uncharacterized_protein_DDB_G0271606_[Bombyx_mori]
FPKM:3.56 TPM:3.29
740 A_BomaMG_comp11126_c0_seq1
1626bp
PREDICTED:_large_subunit_GTPase_1_homolog_[Amyelois_transitella]
GO:0000054 P ribosomal subunit export from nucleus
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0009267 P cellular response to starvation
GO:0015030 C Cajal body
GO:0015031 P protein transport
GO:0016787 F hydrolase activity
GO:0040008 P regulation of growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0046626 P regulation of insulin receptor signaling pathway
GO:0051168 P nuclear export
FPKM:2.93 TPM:2.71
741 A_BomaMG_comp11128_c0_seq1
1662bp
uridine_5'-monophosphate_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004588 F orotate phosphoribosyltransferase activity
GO:0004590 F orotidine-5'-phosphate decarboxylase activity
GO:0005875 C microtubule associated complex
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 P pyrimidine nucleotide biosynthetic process
GO:0008152 P metabolic process
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0044205 P 'de novo' UMP biosynthetic process
FPKM:4.19 TPM:3.88
742 A_BomaMG_comp11129_c0_seq1
282bp
PREDICTED:_sorting_nexin-14-like_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0015031 P protein transport
GO:0030425 C dendrite
GO:0035091 F phosphatidylinositol binding
GO:0042995 C cell projection
FPKM:2.31 TPM:2.14
743 A_BomaMG_comp11129_c0_seq2
343bp
PREDICTED:_sorting_nexin-14-like_[Bombyx_mori]
FPKM:2.51 TPM:2.33
744 A_BomaMG_comp11129_c0_seq3
323bp
PREDICTED:_sorting_nexin-14-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
745 A_BomaMG_comp1112_c0_seq1
338bp
PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
FPKM:1.51 TPM:1.40
746 A_BomaMG_comp11130_c0_seq1
1478bp
reverse_transcriptase_[Bombyx_mori]
FPKM:2.35 TPM:2.17
747 A_BomaMG_comp11131_c0_seq1
1055bp
PREDICTED:_NADH_dehydrogenase_(ubiquinone)_complex_I,_assembly_factor_6_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0032981 P mitochondrial respiratory chain complex I assembly
FPKM:4.61 TPM:4.27
748 A_BomaMG_comp11132_c0_seq1
1279bp
PREDICTED:_histone-lysine_N-methyltransferase_2D-like,_partial_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035097 C histone methyltransferase complex
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0044666 C MLL3/4 complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051568 P histone H3-K4 methylation
FPKM:3.85 TPM:3.57
749 A_BomaMG_comp111331_c0_seq1
317bp
PREDICTED:_probable_Rho_GTPase-activating_protein_CG5521_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:6.46 TPM:5.98
750 A_BomaMG_comp111332_c0_seq1
333bp
FPKM:3.79 TPM:3.51
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