SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
691 A_BomaMG_comp11083_c0_seq1
348bp
FPKM:1.63 TPM:1.50
692 A_BomaMG_comp11085_c0_seq1
2515bp
PREDICTED:_uncharacterized_protein_LOC106143636_[Amyelois_transitella]
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0010923 P negative regulation of phosphatase activity
GO:0019902 F phosphatase binding
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:2.61 TPM:2.42
693 A_BomaMG_comp110864_c0_seq1
591bp
FPKM:3.06 TPM:2.83
694 A_BomaMG_comp11087_c0_seq1
355bp
FPKM:4.68 TPM:4.33
695 A_BomaMG_comp110895_c0_seq1
434bp
FPKM:2.69 TPM:2.49
696 A_BomaMG_comp11092_c0_seq1
818bp
PREDICTED:_protein_suppressor_of_white_apricot_[Bombyx_mori]
FPKM:2.55 TPM:2.36
697 A_BomaMG_comp11094_c0_seq1
964bp
PREDICTED:_F-box_only_protein_7-like_[Plutella_xylostella]
GO:0000151 C ubiquitin ligase complex
GO:0000422 P autophagy of mitochondrion
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006626 P protein targeting to mitochondrion
GO:0016567 P protein ubiquitination
GO:0019901 F protein kinase binding
GO:0031647 P regulation of protein stability
GO:0043234 C protein-containing complex
GO:0045620 P negative regulation of lymphocyte differentiation
GO:0045736 P negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
FPKM:3.24 TPM:3.00
698 A_BomaMG_comp11095_c0_seq1
656bp
PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X1_[Bombyx_mori]
FPKM:2.62 TPM:2.43
699 A_BomaMG_comp11095_c0_seq2
315bp
PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X1_[Bombyx_mori]
FPKM:0.58 TPM:0.54
700 A_BomaMG_comp11096_c0_seq1
791bp
PREDICTED:_protein_MEF2BNB_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.28 TPM:2.11
701 A_BomaMG_comp11097_c0_seq1
326bp
PREDICTED:_uncharacterized_protein_LOC101736185,_partial_[Bombyx_mori]
FPKM:6.77 TPM:6.27
702 A_BomaMG_comp11098_c0_seq1
1702bp
PREDICTED:_cytoskeleton-associated_protein_5_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030951 P establishment or maintenance of microtubule cytoskeleton polarity
GO:0035371 C microtubule plus-end
GO:0043234 C protein-containing complex
GO:0050658 P RNA transport
GO:0051297 P centrosome cycle
GO:0051301 P cell division
FPKM:2.76 TPM:2.55
703 A_BomaMG_comp110998_c0_seq1
512bp
FPKM:3.08 TPM:2.85
704 A_BomaMG_comp11099_c0_seq1
1186bp
PREDICTED:_uncharacterized_protein_LOC106110531_isoform_X1_[Papilio_polytes]
GO:0001923 P B-1 B cell differentiation
GO:0002020 F protease binding
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002237 P response to molecule of bacterial origin
GO:0002726 P positive regulation of T cell cytokine production
GO:0004197 F cysteine-type endopeptidase activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006952 P defense response
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0008233 F peptidase activity
GO:0009620 P response to fungus
GO:0016567 P protein ubiquitination
GO:0016787 F hydrolase activity
GO:0019209 F kinase activator activity
GO:0031398 P positive regulation of protein ubiquitination
GO:0032449 C CBM complex
GO:0032743 P positive regulation of interleukin-2 production
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0042098 P T cell proliferation
GO:0042113 P B cell activation
GO:0042981 P regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043234 C protein-containing complex
GO:0043621 F protein self-association
GO:0045087 P innate immune response
GO:0048471 C perinuclear region of cytoplasm
GO:0050852 P T cell receptor signaling pathway
GO:0050856 P regulation of T cell receptor signaling pathway
GO:0050870 P positive regulation of T cell activation
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051168 P nuclear export
GO:0051259 P protein complex oligomerization
FPKM:2.37 TPM:2.20
705 A_BomaMG_comp11099_c0_seq2
1365bp
PREDICTED:_uncharacterized_protein_LOC106131966_[Amyelois_transitella]
GO:0001923 P B-1 B cell differentiation
GO:0002020 F protease binding
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002237 P response to molecule of bacterial origin
GO:0002726 P positive regulation of T cell cytokine production
GO:0004197 F cysteine-type endopeptidase activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006952 P defense response
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0008233 F peptidase activity
GO:0009620 P response to fungus
GO:0016567 P protein ubiquitination
GO:0016787 F hydrolase activity
GO:0019209 F kinase activator activity
GO:0031398 P positive regulation of protein ubiquitination
GO:0032449 C CBM complex
GO:0032743 P positive regulation of interleukin-2 production
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0042098 P T cell proliferation
GO:0042113 P B cell activation
GO:0042981 P regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043234 C protein-containing complex
GO:0043621 F protein self-association
GO:0045087 P innate immune response
GO:0048471 C perinuclear region of cytoplasm
GO:0050852 P T cell receptor signaling pathway
GO:0050856 P regulation of T cell receptor signaling pathway
GO:0050870 P positive regulation of T cell activation
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051168 P nuclear export
GO:0051259 P protein complex oligomerization
FPKM:0.90 TPM:0.84
706 A_BomaMG_comp1109_c0_seq1
202bp
chemotaxis_protein_[Bradyrhizobium_sp._WSM1743]
FPKM:2.06 TPM:1.91
707 A_BomaMG_comp11100_c0_seq1
748bp
FPKM:3.05 TPM:2.82
708 A_BomaMG_comp11101_c0_seq1
1082bp
PREDICTED:_gamma-taxilin_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0010976 P positive regulation of neuron projection development
GO:0019905 F syntaxin binding
GO:0030017 C sarcomere
FPKM:2.97 TPM:2.75
709 A_BomaMG_comp11102_c0_seq1
649bp
FPKM:3.41 TPM:3.15
710 A_BomaMG_comp11103_c0_seq1
274bp
FPKM:0.71 TPM:0.66
711 A_BomaMG_comp11103_c1_seq1
348bp
PREDICTED:_class_E_vacuolar_protein-sorting_machinery_protein_hse1-like_isoform_X1_[Bombyx_mori]
FPKM:0.41 TPM:0.38
712 A_BomaMG_comp111048_c0_seq1
398bp
FPKM:2.51 TPM:2.32
713 A_BomaMG_comp11104_c0_seq1
614bp
FPKM:2.74 TPM:2.54
714 A_BomaMG_comp11105_c0_seq1
1033bp
PREDICTED:_coiled-coil_domain-containing_protein_186_isoform_X1_[Bombyx_mori]
FPKM:2.54 TPM:2.36
715 A_BomaMG_comp11106_c0_seq1
1490bp
PREDICTED:_G_patch_domain-containing_protein_1_homolog_[Papilio_polytes]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.79 TPM:2.59
716 A_BomaMG_comp11107_c0_seq1
1741bp
FPKM:2.17 TPM:2.01
717 A_BomaMG_comp11107_c1_seq1
1183bp
FPKM:2.33 TPM:2.16
718 A_BomaMG_comp11108_c0_seq1
209bp
FPKM:2.67 TPM:2.47
719 A_BomaMG_comp11109_c0_seq1
1907bp
PREDICTED:_huntingtin_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0002039 F p53 binding
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005522 F profilin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006915 P apoptotic process
GO:0007030 P Golgi organization
GO:0007417 P central nervous system development
GO:0008134 F transcription factor binding
GO:0014069 C postsynaptic density
GO:0030136 C clathrin-coated vesicle
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030659 C cytoplasmic vesicle membrane
GO:0031587 P positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0034452 F dynactin binding
GO:0042297 P vocal learning
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0044325 F transmembrane transporter binding
GO:0045505 F dynein intermediate chain binding
GO:0045724 P positive regulation of cilium assembly
GO:0047496 P vesicle transport along microtubule
GO:0048487 F beta-tubulin binding
GO:0048513 P animal organ development
GO:0051028 P mRNA transport
GO:0071598 C neuronal ribonucleoprotein granule
GO:2000117 P negative regulation of cysteine-type endopeptidase activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
FPKM:1.76 TPM:1.63
720 A_BomaMG_comp11109_c0_seq2
3471bp
PREDICTED:_huntingtin_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0002039 F p53 binding
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005522 F profilin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006915 P apoptotic process
GO:0007030 P Golgi organization
GO:0007417 P central nervous system development
GO:0008134 F transcription factor binding
GO:0014069 C postsynaptic density
GO:0030136 C clathrin-coated vesicle
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030659 C cytoplasmic vesicle membrane
GO:0031587 P positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0034452 F dynactin binding
GO:0042297 P vocal learning
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0044325 F transmembrane transporter binding
GO:0045505 F dynein intermediate chain binding
GO:0045724 P positive regulation of cilium assembly
GO:0047496 P vesicle transport along microtubule
GO:0048487 F beta-tubulin binding
GO:0048513 P animal organ development
GO:0051028 P mRNA transport
GO:0071598 C neuronal ribonucleoprotein granule
GO:2000117 P negative regulation of cysteine-type endopeptidase activity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
FPKM:2.05 TPM:1.89
previous next from show/39865

- SilkBase 1999-2023 -