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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
7111 A_BomaMG_comp165602_c0_seq1
390bp
putative_histone_deacetylase_7A_[Danaus_plexippus]
GO:0000118 C histone deacetylase complex
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010830 P regulation of myotube differentiation
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0040029 P regulation of gene expression, epigenetic
GO:0046872 F metal ion binding
GO:0070932 P histone H3 deacetylation
FPKM:2.60 TPM:2.41
7112 A_BomaMG_comp16562_c0_seq1
1030bp
NADPH_oxidoreductase_[Bombyx_mori]
FPKM:1.05 TPM:0.97
7113 A_BomaMG_comp16562_c0_seq2
1199bp
NADPH_oxidoreductase_[Bombyx_mori]
FPKM:1.02 TPM:0.95
7114 A_BomaMG_comp16563_c0_seq1
2319bp
aquaporin_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:45.81 TPM:42.42
7115 A_BomaMG_comp16563_c0_seq2
2391bp
PREDICTED:_aquaporin_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:18.21 TPM:16.86
7116 A_BomaMG_comp165645_c0_seq1
670bp
PREDICTED:_uncharacterized_protein_LOC101737933_[Bombyx_mori]
FPKM:1.73 TPM:1.61
7117 A_BomaMG_comp16564_c0_seq1
609bp
putative_ATP-dependent_RNA_helicase_kurz_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
FPKM:1.43 TPM:1.32
7118 A_BomaMG_comp16564_c1_seq1
226bp
hypothetical_protein_KGM_15528_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
FPKM:2.62 TPM:2.42
7119 A_BomaMG_comp16564_c2_seq1
444bp
PREDICTED:_probable_ATP-dependent_RNA_helicase_kurz_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
FPKM:1.42 TPM:1.32
7120 A_BomaMG_comp16565_c0_seq1
279bp
transcriptional_regulator_AsnC_family_[Clostridium_sp._CAG:167]
FPKM:1.36 TPM:1.26
7121 A_BomaMG_comp16566_c0_seq1
2288bp
PREDICTED:_ER_degradation-enhancing_alpha-mannosidase-like_protein_2_[Amyelois_transitella]
GO:0001948 F protein binding
GO:0004559 F alpha-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006491 P N-glycan processing
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036509 P trimming of terminal mannose on B branch
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0097466 P ubiquitin-dependent glycoprotein ERAD pathway
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:1904380 P endoplasmic reticulum mannose trimming
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
FPKM:9.24 TPM:8.56
7122 A_BomaMG_comp16567_c0_seq1
661bp
FPKM:1.48 TPM:1.37
7123 A_BomaMG_comp165681_c0_seq1
645bp
PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743906_[Bombyx_mori]
FPKM:1.53 TPM:1.42
7124 A_BomaMG_comp16568_c0_seq1
217bp
FPKM:2.29 TPM:2.12
7125 A_BomaMG_comp16568_c1_seq1
332bp
FPKM:1.35 TPM:1.25
7126 A_BomaMG_comp16570_c0_seq1
1403bp
PREDICTED:_nuclear_speckle_splicing_regulatory_protein_1_[Amyelois_transitella]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006913 P nucleocytoplasmic transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0032502 P developmental process
GO:0044822 F RNA binding
FPKM:9.81 TPM:9.08
7127 A_BomaMG_comp16571_c0_seq1
256bp
FPKM:1.30 TPM:1.20
7128 A_BomaMG_comp16572_c0_seq1
394bp
FPKM:2.71 TPM:2.51
7129 A_BomaMG_comp16574_c0_seq1
453bp
FPKM:2.25 TPM:2.08
7130 A_BomaMG_comp16575_c0_seq1
349bp
FPKM:1.82 TPM:1.68
7131 A_BomaMG_comp16576_c0_seq1
416bp
raf_kinase,_effector_of_Ras_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002168 P instar larval development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007283 P spermatogenesis
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0007369 P gastrulation
GO:0007428 P primary branching, open tracheal system
GO:0007472 P wing disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007552 P metamorphosis
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008284 P positive regulation of cell population proliferation
GO:0008293 P torso signaling pathway
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0009267 P cellular response to starvation
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030097 P hemopoiesis
GO:0030641 P regulation of cellular pH
GO:0035171 P lamellocyte differentiation
GO:0035309 P wing and notum subfield formation
GO:0035556 P intracellular signal transduction
GO:0040014 P regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046534 P positive regulation of photoreceptor cell differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:2001234 P negative regulation of apoptotic signaling pathway
FPKM:1.74 TPM:1.61
7132 A_BomaMG_comp16576_c1_seq1
202bp
raf_kinase,_effector_of_Ras_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002168 P instar larval development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007283 P spermatogenesis
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0007369 P gastrulation
GO:0007428 P primary branching, open tracheal system
GO:0007472 P wing disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007552 P metamorphosis
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008284 P positive regulation of cell population proliferation
GO:0008293 P torso signaling pathway
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0009267 P cellular response to starvation
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030097 P hemopoiesis
GO:0030641 P regulation of cellular pH
GO:0035171 P lamellocyte differentiation
GO:0035309 P wing and notum subfield formation
GO:0035556 P intracellular signal transduction
GO:0040014 P regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046534 P positive regulation of photoreceptor cell differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0051726 P regulation of cell cycle
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:2001234 P negative regulation of apoptotic signaling pathway
FPKM:2.06 TPM:1.91
7133 A_BomaMG_comp16577_c0_seq1
419bp
PREDICTED:_calcium-activated_potassium_channel_slowpoke_isoform_X1_[Amyelois_transitella]
GO:0005216 F ion channel activity
GO:0005244 F voltage-gated ion channel activity
GO:0005249 F voltage-gated potassium channel activity
GO:0005267 F potassium channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0007623 P circadian rhythm
GO:0008076 C voltage-gated potassium channel complex
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0015269 F calcium-activated potassium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0042493 P response to xenobiotic stimulus
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0048512 P circadian behavior
GO:0055085 P transmembrane transport
GO:0060072 F large conductance calcium-activated potassium channel activity
GO:0071805 P potassium ion transmembrane transport
GO:1900074 P negative regulation of neuromuscular synaptic transmission
FPKM:1.14 TPM:1.06
7134 A_BomaMG_comp16578_c0_seq1
359bp
ceramide_glucosyltransferase_[Candidatus_Scalindua_brodae]
FPKM:1.33 TPM:1.24
7135 A_BomaMG_comp16579_c0_seq1
474bp
FPKM:2.78 TPM:2.58
7136 A_BomaMG_comp16579_c1_seq1
561bp
FPKM:4.29 TPM:3.97
7137 A_BomaMG_comp1657_c0_seq1
236bp
FPKM:1.12 TPM:1.04
7138 A_BomaMG_comp165801_c0_seq1
437bp
FPKM:2.12 TPM:1.97
7139 A_BomaMG_comp16580_c0_seq1
224bp
PREDICTED:_leukocyte_tyrosine_kinase_receptor_[Acyrthosiphon_pisum]
FPKM:2.03 TPM:1.88
7140 A_BomaMG_comp16581_c0_seq1
1059bp
PREDICTED:_complex_I_intermediate-associated_protein_30,_mitochondrial_isoform_X1_[Papilio_machaon]
GO:0001666 P response to hypoxia
GO:0005739 C mitochondrion
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006119 P oxidative phosphorylation
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0007005 P mitochondrion organization
GO:0009408 P response to heat
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0042594 P response to starvation
GO:0051082 F unfolded protein binding
GO:0055093 P response to hyperoxia
FPKM:9.87 TPM:9.14
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