SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6751 A_BomaMG_comp16300_c1_seq1
294bp
reverse_transcriptase_[Bombyx_mori]
FPKM:2.08 TPM:1.93
6752 A_BomaMG_comp163018_c0_seq1
477bp
PREDICTED:_ral_GTPase-activating_protein_subunit_beta-like_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0046982 F protein heterodimerization activity
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0090630 P activation of GTPase activity
FPKM:2.18 TPM:2.02
6753 A_BomaMG_comp16301_c0_seq1
1020bp
hypothetical_protein_M514_27248_[Trichuris_suis]
FPKM:1.90 TPM:1.76
6754 A_BomaMG_comp16302_c0_seq1
1152bp
PREDICTED:_heat_shock_factor-binding_protein_1_[Papilio_xuthus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005856 C cytoskeleton
GO:0006936 P muscle contraction
GO:0035987 P endodermal cell differentiation
GO:1900034 P regulation of cellular response to heat
FPKM:27.38 TPM:25.35
6755 A_BomaMG_comp163031_c0_seq1
265bp
white_collar_1-like_protein_[Ganoderma_lucidum]
FPKM:5.09 TPM:4.71
6756 A_BomaMG_comp16303_c0_seq1
939bp
yellow-y_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0042438 P melanin biosynthetic process
GO:0060179 P male mating behavior
FPKM:1.56 TPM:1.45
6757 A_BomaMG_comp16303_c1_seq1
870bp
yellow-y_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0042438 P melanin biosynthetic process
GO:0060179 P male mating behavior
FPKM:1.67 TPM:1.55
6758 A_BomaMG_comp16305_c0_seq1
378bp
FPKM:2.41 TPM:2.24
6759 A_BomaMG_comp16307_c0_seq1
581bp
FPKM:1.78 TPM:1.65
6760 A_BomaMG_comp16309_c0_seq1
407bp
PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]
FPKM:3.01 TPM:2.78
6761 A_BomaMG_comp16309_c1_seq1
468bp
PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:1.78 TPM:1.64
6762 A_BomaMG_comp1630_c0_seq1
244bp
ATP-dependent_RNA_helicase_[Pseudoloma_neurophilia]
FPKM:1.01 TPM:0.93
6763 A_BomaMG_comp16310_c0_seq1
351bp
FPKM:2.79 TPM:2.59
6764 A_BomaMG_comp16310_c1_seq1
354bp
FPKM:3.14 TPM:2.91
6765 A_BomaMG_comp163113_c0_seq1
1116bp
PREDICTED:_uncharacterized_protein_LOC101742944_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001658 P branching involved in ureteric bud morphogenesis
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0008083 F growth factor activity
GO:0008284 P positive regulation of cell population proliferation
GO:0016020 C membrane
GO:0030154 P cell differentiation
GO:0051781 P positive regulation of cell division
GO:0060688 P regulation of morphogenesis of a branching structure
FPKM:1.81 TPM:1.68
6766 A_BomaMG_comp16311_c0_seq1
921bp
PREDICTED:_uncharacterized_protein_LOC101736992_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030154 P cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048477 P oogenesis
FPKM:1.60 TPM:1.48
6767 A_BomaMG_comp16311_c1_seq1
754bp
PREDICTED:_uncharacterized_protein_LOC101736992_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030154 P cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048477 P oogenesis
FPKM:1.89 TPM:1.75
6768 A_BomaMG_comp163124_c0_seq1
1284bp
PREDICTED:_autophagy-related_protein_16-1_isoform_X2_[Papilio_machaon]
GO:0000045 P autophagosome assembly
GO:0000421 C autophagosome membrane
GO:0016236 P macroautophagy
GO:0019776 F Atg8 ligase activity
GO:0030587 P sorocarp development
GO:0031154 P culmination involved in sorocarp development
GO:0034274 C Atg12-Atg5-Atg16 complex
FPKM:1.29 TPM:1.19
6769 A_BomaMG_comp16312_c0_seq1
376bp
PREDICTED:_arf-GAP_with_dual_PH_domain-containing_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007166 P cell surface receptor signaling pathway
GO:0043087 P regulation of GTPase activity
GO:0043533 F inositol 1,3,4,5 tetrakisphosphate binding
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
FPKM:2.79 TPM:2.58
6770 A_BomaMG_comp16312_c1_seq1
904bp
PREDICTED:_arf-GAP_with_dual_PH_domain-containing_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007166 P cell surface receptor signaling pathway
GO:0043087 P regulation of GTPase activity
GO:0043533 F inositol 1,3,4,5 tetrakisphosphate binding
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
FPKM:1.78 TPM:1.65
6771 A_BomaMG_comp16313_c0_seq1
370bp
FPKM:0.71 TPM:0.66
6772 A_BomaMG_comp16313_c0_seq2
687bp
FPKM:2.28 TPM:2.11
6773 A_BomaMG_comp16314_c0_seq1
354bp
FPKM:2.55 TPM:2.36
6774 A_BomaMG_comp16315_c0_seq1
367bp
FPKM:1.28 TPM:1.18
6775 A_BomaMG_comp16315_c1_seq1
426bp
PREDICTED:_cilia-_and_flagella-associated_protein_58-like_[Bombyx_mori]
FPKM:2.22 TPM:2.05
6776 A_BomaMG_comp16316_c0_seq1
686bp
PREDICTED:_phagocyte_signaling-impaired_protein_isoform_X1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0003674 F molecular_function
GO:0005764 C lysosome
GO:0006911 P phagocytosis, engulfment
GO:0006955 P immune response
GO:0045087 P innate immune response
FPKM:1.88 TPM:1.74
6777 A_BomaMG_comp16316_c1_seq1
832bp
PREDICTED:_phagocyte_signaling-impaired_protein_isoform_X3_[Bombyx_mori]
GO:0002376 P immune system process
GO:0003674 F molecular_function
GO:0004596 F peptide alpha-N-acetyltransferase activity
GO:0005764 C lysosome
GO:0006911 P phagocytosis, engulfment
GO:0006955 P immune response
GO:0017196 P N-terminal peptidyl-methionine acetylation
GO:0031416 C NatB complex
GO:0045087 P innate immune response
FPKM:1.77 TPM:1.64
6778 A_BomaMG_comp16317_c0_seq1
266bp
FPKM:2.71 TPM:2.51
6779 A_BomaMG_comp1631_c0_seq1
213bp
FPKM:2.47 TPM:2.28
6780 A_BomaMG_comp163201_c0_seq1
513bp
PREDICTED:_uncharacterized_protein_LOC106123166_[Papilio_xuthus]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007414 P axonal defasciculation
GO:0007415 P defasciculation of motor neuron axon
GO:0008045 P motor neuron axon guidance
GO:0010906 P regulation of glucose metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
FPKM:2.56 TPM:2.37
previous next from show/39865

- SilkBase 1999-2023 -