SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6721 A_BomaMG_comp16279_c1_seq1
318bp
FPKM:2.22 TPM:2.06
6722 A_BomaMG_comp1627_c0_seq1
396bp
FPKM:1.11 TPM:1.02
6723 A_BomaMG_comp16280_c0_seq1
923bp
FPKM:1.37 TPM:1.27
6724 A_BomaMG_comp16280_c1_seq1
378bp
Serine/threonine-protein_kinase_NLK,_partial_[Stegodyphus_mimosarum]
FPKM:1.90 TPM:1.76
6725 A_BomaMG_comp162815_c0_seq1
547bp
FPKM:1.58 TPM:1.46
6726 A_BomaMG_comp16281_c0_seq1
240bp
FPKM:1.06 TPM:0.98
6727 A_BomaMG_comp162829_c0_seq1
592bp
FPKM:1.40 TPM:1.30
6728 A_BomaMG_comp16282_c0_seq1
267bp
hypothetical_protein_X841_07605_[Streptococcus_thermophilus_M17PTZA496]
FPKM:3.83 TPM:3.55
6729 A_BomaMG_comp16283_c0_seq1
397bp
FPKM:0.94 TPM:0.87
6730 A_BomaMG_comp16283_c1_seq1
729bp
FPKM:1.48 TPM:1.37
6731 A_BomaMG_comp16284_c0_seq1
261bp
hypothetical_protein_[Methanosarcina_sp._2.H.A.1B.4]
FPKM:2.04 TPM:1.89
6732 A_BomaMG_comp162859_c0_seq1
775bp
FPKM:1.94 TPM:1.80
6733 A_BomaMG_comp16285_c0_seq1
467bp
FPKM:1.54 TPM:1.43
6734 A_BomaMG_comp16286_c0_seq1
771bp
FPKM:1.95 TPM:1.81
6735 A_BomaMG_comp16287_c0_seq1
421bp
FPKM:1.84 TPM:1.70
6736 A_BomaMG_comp16287_c1_seq1
1046bp
PREDICTED:_uncharacterized_protein_LOC106137299_[Amyelois_transitella]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0006364 P rRNA processing
FPKM:2.31 TPM:2.14
6737 A_BomaMG_comp162881_c0_seq1
615bp
FPKM:1.88 TPM:1.74
6738 A_BomaMG_comp16288_c0_seq1
562bp
FPKM:2.23 TPM:2.06
6739 A_BomaMG_comp16289_c0_seq1
970bp
coatomer_alpha_subunit_[Cryptococcus_gattii_WM276]
FPKM:1.67 TPM:1.55
6740 A_BomaMG_comp16290_c0_seq1
432bp
PREDICTED:_LOW_QUALITY_PROTEIN:_TATA-binding_protein-associated_factor_172_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:2.30 TPM:2.13
6741 A_BomaMG_comp162925_c0_seq1
342bp
FPKM:2.11 TPM:1.95
6742 A_BomaMG_comp16292_c0_seq1
274bp
PREDICTED:_pentatricopeptide_repeat-containing_protein_At3g26540_[Nicotiana_tomentosiformis]
FPKM:2.85 TPM:2.64
6743 A_BomaMG_comp16293_c0_seq1
460bp
Gasp_protein_[Choristoneura_fumiferana]
FPKM:1.95 TPM:1.80
6744 A_BomaMG_comp16294_c0_seq1
1519bp
PREDICTED:_unconventional_myosin-IXa-like_isoform_X3_[Bombyx_mori]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0001726 C ruffle
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005938 C cell cortex
GO:0007165 P signal transduction
GO:0007266 P Rho protein signal transduction
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016459 C myosin complex
GO:0016887 F ATP hydrolysis activity
GO:0030027 C lamellipodium
GO:0030048 P actin filament-based movement
GO:0030898 F microfilament motor activity
GO:0035023 P regulation of Rho protein signal transduction
GO:0035385 P Roundabout signaling pathway
GO:0035556 P intracellular signal transduction
GO:0043008 F ATP-dependent protein binding
GO:0043531 F ADP binding
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
FPKM:2.00 TPM:1.85
6745 A_BomaMG_comp16295_c0_seq1
282bp
FPKM:2.97 TPM:2.75
6746 A_BomaMG_comp16295_c1_seq1
1515bp
FPKM:1.85 TPM:1.71
6747 A_BomaMG_comp16296_c0_seq1
916bp
PREDICTED:_uncharacterized_protein_LOC105390497_[Plutella_xylostella]
FPKM:1.75 TPM:1.62
6748 A_BomaMG_comp16297_c0_seq1
802bp
FPKM:7.09 TPM:6.57
6749 A_BomaMG_comp1629_c0_seq1
560bp
PREDICTED:_zinc_finger_protein_2-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:0.72 TPM:0.66
6750 A_BomaMG_comp16300_c0_seq1
1333bp
reverse_transcriptase_[Bombyx_mori]
FPKM:1.59 TPM:1.47
previous next from show/39865

- SilkBase 1999-2023 -