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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6301 A_BomaMG_comp159_c0_seq1
243bp
PREDICTED:_transcriptional_enhancer_factor_TEF-3_[Bombyx_mori]
FPKM:0.51 TPM:0.47
6302 A_BomaMG_comp15_c0_seq1
231bp
FPKM:1.21 TPM:1.12
6303 A_BomaMG_comp16000_c0_seq1
767bp
FPKM:1.21 TPM:1.12
6304 A_BomaMG_comp16001_c0_seq1
788bp
putative_ATP-dependent_RNA_helicase_kurz_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0022008 P neurogenesis
GO:0044822 F RNA binding
FPKM:1.45 TPM:1.34
6305 A_BomaMG_comp16003_c0_seq1
339bp
FPKM:2.79 TPM:2.58
6306 A_BomaMG_comp16003_c1_seq1
609bp
FPKM:1.82 TPM:1.69
6307 A_BomaMG_comp16006_c0_seq1
992bp
PREDICTED:_male-specific_lethal_3_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
FPKM:0.50 TPM:0.46
6308 A_BomaMG_comp16006_c0_seq2
968bp
male-specific_lethal_3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
FPKM:1.03 TPM:0.96
6309 A_BomaMG_comp160073_c0_seq1
336bp
FPKM:1.75 TPM:1.62
6310 A_BomaMG_comp160098_c0_seq1
591bp
PREDICTED:_voltage-dependent_calcium_channel_subunit_alpha-2/delta-3_isoform_X4_[Bombyx_mori]
GO:0005244 F voltage-gated ion channel activity
GO:0005245 F voltage-gated calcium channel activity
GO:0005246 F calcium channel regulator activity
GO:0005262 F calcium channel activity
GO:0005886 C plasma membrane
GO:0005891 C voltage-gated calcium channel complex
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0046872 F metal ion binding
GO:0050908 P detection of light stimulus involved in visual perception
GO:0051924 P regulation of calcium ion transport
GO:0061337 P cardiac conduction
GO:0070588 P calcium ion transmembrane transport
FPKM:1.82 TPM:1.69
6311 A_BomaMG_comp16010_c0_seq1
504bp
FPKM:2.00 TPM:1.85
6312 A_BomaMG_comp16010_c1_seq1
264bp
FPKM:0.79 TPM:0.73
6313 A_BomaMG_comp16011_c0_seq1
211bp
PREDICTED:_interferon-related_developmental_regulator_2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
FPKM:5.13 TPM:4.75
6314 A_BomaMG_comp160121_c0_seq1
447bp
FPKM:2.04 TPM:1.89
6315 A_BomaMG_comp16013_c0_seq1
270bp
class_II_aldolase_and_adducin_domain_[Bacillus_anthracis_str._Sterne]
FPKM:3.34 TPM:3.09
6316 A_BomaMG_comp16014_c0_seq1
419bp
FPKM:1.71 TPM:1.59
6317 A_BomaMG_comp160154_c0_seq1
412bp
hypothetical_protein_A1Q1_02160_[Trichosporon_asahii_var._asahii_CBS_2479]
FPKM:3.09 TPM:2.86
6318 A_BomaMG_comp160156_c0_seq1
266bp
FPKM:1.94 TPM:1.79
6319 A_BomaMG_comp16015_c0_seq1
323bp
FPKM:2.62 TPM:2.43
6320 A_BomaMG_comp16016_c0_seq1
218bp
hypothetical_protein_[Clostridium_botulinum]
FPKM:2.25 TPM:2.08
6321 A_BomaMG_comp16017_c0_seq1
295bp
FPKM:2.65 TPM:2.46
6322 A_BomaMG_comp160183_c0_seq1
260bp
PREDICTED:_uncharacterized_protein_LOC101745243_[Bombyx_mori]
FPKM:5.38 TPM:4.98
6323 A_BomaMG_comp16018_c0_seq1
437bp
FPKM:1.99 TPM:1.84
6324 A_BomaMG_comp160191_c0_seq1
758bp
PREDICTED:_probable_histone-lysine_N-methyltransferase_set-23_[Plutella_xylostella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:1.76 TPM:1.63
6325 A_BomaMG_comp16019_c0_seq1
435bp
PREDICTED:_transcriptional_regulator_ATRX_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
FPKM:2.27 TPM:2.11
6326 A_BomaMG_comp16021_c0_seq1
661bp
PREDICTED:_LOW_QUALITY_PROTEIN:_condensin_complex_subunit_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0030261 P chromosome condensation
GO:0051301 P cell division
FPKM:1.77 TPM:1.64
6327 A_BomaMG_comp16021_c1_seq1
669bp
PREDICTED:_LOW_QUALITY_PROTEIN:_condensin_complex_subunit_1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000779 C condensed chromosome, centromeric region
GO:0000793 C condensed chromosome
GO:0000796 C condensin complex
GO:0000799 C condensin complex
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0010032 P meiotic chromosome condensation
GO:0016020 C membrane
GO:0030261 P chromosome condensation
GO:0042393 F histone binding
GO:0045120 C pronucleus
GO:0051301 P cell division
GO:0051304 P chromosome separation
FPKM:1.04 TPM:0.97
6328 A_BomaMG_comp160223_c0_seq1
562bp
hypothetical_protein_[Hippea_alviniae]
FPKM:1.51 TPM:1.40
6329 A_BomaMG_comp160225_c0_seq1
893bp
FPKM:1.28 TPM:1.19
6330 A_BomaMG_comp16022_c0_seq1
730bp
diapause_associated_protein_2_[Antheraea_pernyi]
FPKM:1.98 TPM:1.83
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