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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6211 A_BomaMG_comp15934_c0_seq1
1948bp
PREDICTED:_transformation/transcription_domain-associated_protein_[Papilio_machaon]
GO:0000123 C histone acetyltransferase complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
FPKM:1.38 TPM:1.28
6212 A_BomaMG_comp15935_c0_seq1
291bp
FPKM:0.91 TPM:0.85
6213 A_BomaMG_comp15936_c0_seq1
510bp
PREDICTED:_USP6_N-terminal-like_protein_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0007030 P Golgi organization
GO:0012505 C endomembrane system
GO:0016023 C cytoplasmic vesicle
GO:0017137 F small GTPase binding
GO:0019068 P virion assembly
GO:0031338 P regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0035526 P retrograde transport, plasma membrane to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048227 P plasma membrane to endosome transport
GO:0090630 P activation of GTPase activity
GO:1903358 P regulation of Golgi organization
FPKM:1.44 TPM:1.34
6214 A_BomaMG_comp15937_c0_seq1
560bp
FPKM:1.61 TPM:1.49
6215 A_BomaMG_comp15939_c0_seq1
439bp
FPKM:1.98 TPM:1.83
6216 A_BomaMG_comp15941_c0_seq1
282bp
PREDICTED:_rho_guanine_nucleotide_exchange_factor_17_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005829 C cytosol
GO:0030036 P actin cytoskeleton organization
GO:0035023 P regulation of Rho protein signal transduction
GO:0043065 P positive regulation of apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:2.97 TPM:2.75
6217 A_BomaMG_comp15941_c1_seq1
245bp
PREDICTED:_rho_guanine_nucleotide_exchange_factor_17_isoform_X2_[Bombyx_mori]
FPKM:0.50 TPM:0.46
6218 A_BomaMG_comp159427_c0_seq1
683bp
FPKM:1.62 TPM:1.50
6219 A_BomaMG_comp15944_c0_seq1
345bp
FPKM:1.24 TPM:1.15
6220 A_BomaMG_comp15945_c0_seq1
728bp
FPKM:1.67 TPM:1.55
6221 A_BomaMG_comp15945_c1_seq1
743bp
FPKM:1.81 TPM:1.68
6222 A_BomaMG_comp15946_c0_seq1
254bp
transposase_for_IS1272_[Staphylococcus_aureus]
FPKM:0.44 TPM:0.41
6223 A_BomaMG_comp159471_c0_seq1
984bp
FPKM:1.60 TPM:1.48
6224 A_BomaMG_comp15947_c0_seq1
469bp
PREDICTED:_protein_timeless_homolog_isoform_X3_[Bombyx_mori]
FPKM:2.12 TPM:1.97
6225 A_BomaMG_comp15947_c1_seq1
1286bp
PREDICTED:_protein_timeless_homolog_isoform_X3_[Bombyx_mori]
GO:0001658 P branching involved in ureteric bud morphogenesis
GO:0001822 P kidney development
GO:0002009 P morphogenesis of an epithelium
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007623 P circadian rhythm
GO:0042752 P regulation of circadian rhythm
GO:0042753 P positive regulation of circadian rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0051301 P cell division
FPKM:1.65 TPM:1.53
6226 A_BomaMG_comp159488_c0_seq1
341bp
PREDICTED:_uncharacterized_protein_LOC101744337_[Bombyx_mori]
FPKM:1.70 TPM:1.57
6227 A_BomaMG_comp15948_c0_seq1
329bp
FPKM:0.92 TPM:0.85
6228 A_BomaMG_comp15949_c0_seq1
312bp
FPKM:2.06 TPM:1.91
6229 A_BomaMG_comp1594_c0_seq1
203bp
FPKM:4.04 TPM:3.74
6230 A_BomaMG_comp15951_c0_seq1
549bp
PREDICTED:_tetratricopeptide_repeat_protein_17_isoform_X1_[Bombyx_mori]
FPKM:2.77 TPM:2.56
6231 A_BomaMG_comp159522_c0_seq1
764bp
PREDICTED:_protein_NATD1_[Amyelois_transitella]
GO:0000790 C chromatin
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0008589 P regulation of smoothened signaling pathway
GO:0021591 P ventricular system development
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0030991 C intraciliary transport particle A
GO:0035721 P intraciliary retrograde transport
GO:0035735 P intraciliary transport involved in cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
GO:0061512 P protein localization to cilium
FPKM:1.69 TPM:1.56
6232 A_BomaMG_comp159524_c0_seq1
425bp
FPKM:1.95 TPM:1.81
6233 A_BomaMG_comp15952_c0_seq1
810bp
PREDICTED:_zinc_finger_protein_ZPR1_[Papilio_polytes]
GO:0000226 P microtubule cytoskeleton organization
GO:0001833 P inner cell mass cell proliferation
GO:0001834 P trophectodermal cell proliferation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0010628 P positive regulation of gene expression
GO:0015030 C Cajal body
GO:0021510 P spinal cord development
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0030426 C growth cone
GO:0030576 P Cajal body organization
GO:0030971 F receptor tyrosine kinase binding
GO:0031369 F translation initiation factor binding
GO:0031641 P regulation of myelination
GO:0032797 C SMN complex
GO:0033120 P positive regulation of RNA splicing
GO:0042023 P DNA endoreduplication
GO:0042307 P positive regulation of protein import into nucleus
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0045927 P positive regulation of growth
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0061564 P axon development
GO:0071364 P cellular response to epidermal growth factor stimulus
GO:0071931 P positive regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0097504 C Gemini of coiled bodies
GO:1902742 P apoptotic process involved in development
GO:1990261 P pre-mRNA catabolic process
GO:2000672 P negative regulation of motor neuron apoptotic process
FPKM:1.83 TPM:1.70
6234 A_BomaMG_comp159530_c0_seq1
903bp
FPKM:1.45 TPM:1.35
6235 A_BomaMG_comp159534_c0_seq1
213bp
FPKM:2.47 TPM:2.28
6236 A_BomaMG_comp15953_c0_seq1
409bp
FPKM:2.09 TPM:1.93
6237 A_BomaMG_comp159548_c0_seq1
295bp
Hypothetical_protein,_putative_[Bodo_saltans]
FPKM:3.24 TPM:3.00
6238 A_BomaMG_comp159553_c0_seq1
210bp
FPKM:2.62 TPM:2.42
6239 A_BomaMG_comp159565_c0_seq1
405bp
PREDICTED:_eukaryotic_translation_initiation_factor_4E_transporter-like_[Bombyx_mori]
FPKM:2.58 TPM:2.39
6240 A_BomaMG_comp15956_c0_seq1
390bp
FPKM:0.81 TPM:0.75
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