SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6061 A_BomaMG_comp15812_c1_seq1
211bp
FPKM:2.56 TPM:2.37
6062 A_BomaMG_comp15814_c0_seq1
474bp
FPKM:1.62 TPM:1.50
6063 A_BomaMG_comp158154_c0_seq1
501bp
PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0035562 P negative regulation of chromatin binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:1.80 TPM:1.67
6064 A_BomaMG_comp15815_c0_seq1
755bp
PREDICTED:_importin-11_[Bombyx_mori]
FPKM:1.54 TPM:1.42
6065 A_BomaMG_comp15816_c0_seq1
2518bp
PREDICTED:_myosin-VIIa_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007605 P sensory perception of sound
GO:0008152 P metabolic process
GO:0008407 P chaeta morphogenesis
GO:0016459 C myosin complex
GO:0030048 P actin filament-based movement
GO:0030898 F microfilament motor activity
GO:0032027 F myosin light chain binding
GO:0035317 P imaginal disc-derived wing hair organization
GO:0048800 P antennal morphogenesis
FPKM:2.68 TPM:2.48
6066 A_BomaMG_comp15816_c1_seq1
934bp
PREDICTED:_myosin-VIIa_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007605 P sensory perception of sound
GO:0008152 P metabolic process
GO:0008407 P chaeta morphogenesis
GO:0016459 C myosin complex
GO:0030048 P actin filament-based movement
GO:0030898 F microfilament motor activity
GO:0032027 F myosin light chain binding
GO:0035317 P imaginal disc-derived wing hair organization
GO:0048800 P antennal morphogenesis
FPKM:1.98 TPM:1.83
6067 A_BomaMG_comp15817_c0_seq1
691bp
PREDICTED:_zinc_finger_protein_583-like,_partial_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.86 TPM:1.72
6068 A_BomaMG_comp15818_c0_seq1
3402bp
olfactory_receptor_[Bombyx_mori]
FPKM:3.70 TPM:3.42
6069 A_BomaMG_comp15818_c1_seq1
236bp
uncharacterized_N-terminal_domain_of_tricorn_protease_[Bacteroidales_bacterium_6E]
FPKM:3.93 TPM:3.64
6070 A_BomaMG_comp15819_c0_seq1
428bp
FPKM:2.89 TPM:2.67
6071 A_BomaMG_comp158208_c0_seq1
204bp
FPKM:2.96 TPM:2.74
6072 A_BomaMG_comp15820_c0_seq1
662bp
hypothetical_protein_T265_01652_[Opisthorchis_viverrini]
FPKM:1.41 TPM:1.31
6073 A_BomaMG_comp15821_c0_seq1
315bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Papilio_xuthus]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:3.78 TPM:3.50
6074 A_BomaMG_comp15822_c0_seq1
1119bp
hypothetical_protein_[Sporisorium_scitamineum]
FPKM:2.06 TPM:1.91
6075 A_BomaMG_comp15822_c1_seq1
611bp
PREDICTED:_serine/threonine-protein_phosphatase_2B_catalytic_subunit_gamma_isoform_[Dasypus_novemcinctus]
FPKM:1.74 TPM:1.61
6076 A_BomaMG_comp15825_c0_seq1
246bp
PREDICTED:_uncharacterized_protein_LOC105843014_[Bombyx_mori]
FPKM:3.43 TPM:3.17
6077 A_BomaMG_comp15826_c0_seq1
722bp
PREDICTED:_nuclear_pore_complex_protein_Nup85_[Amyelois_transitella]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006935 P chemotaxis
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0019221 P cytokine-mediated signaling pathway
GO:0030032 P lamellipodium assembly
GO:0031080 C nuclear pore outer ring
GO:0031727 F CCR2 chemokine receptor binding
GO:0031965 C nuclear membrane
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048246 P macrophage chemotaxis
GO:0051028 P mRNA transport
FPKM:2.44 TPM:2.26
6078 A_BomaMG_comp15826_c1_seq1
862bp
PREDICTED:_nuclear_pore_complex_protein_Nup85_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051028 P mRNA transport
FPKM:2.04 TPM:1.89
6079 A_BomaMG_comp15828_c0_seq1
612bp
FPKM:1.88 TPM:1.74
6080 A_BomaMG_comp15828_c1_seq1
713bp
FPKM:1.85 TPM:1.71
6081 A_BomaMG_comp15829_c0_seq1
652bp
FPKM:1.94 TPM:1.80
6082 A_BomaMG_comp15829_c1_seq1
206bp
FPKM:0.00 TPM:0.00
6083 A_BomaMG_comp1582_c0_seq1
232bp
FPKM:2.38 TPM:2.21
6084 A_BomaMG_comp15830_c0_seq1
826bp
FPKM:1.52 TPM:1.41
6085 A_BomaMG_comp15831_c0_seq1
291bp
FPKM:3.35 TPM:3.10
6086 A_BomaMG_comp15831_c1_seq1
280bp
PREDICTED:_zinc_finger_protein_Pegasus_[Nothobranchius_furzeri]
FPKM:1.01 TPM:0.93
6087 A_BomaMG_comp15832_c0_seq1
404bp
unnamed_protein_product_[Albugo_candida]
FPKM:2.13 TPM:1.98
6088 A_BomaMG_comp15832_c1_seq1
508bp
FPKM:1.66 TPM:1.54
6089 A_BomaMG_comp15833_c0_seq1
475bp
PREDICTED:_actin-related_protein_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
FPKM:2.08 TPM:1.93
6090 A_BomaMG_comp15833_c1_seq1
729bp
PREDICTED:_actin-related_protein_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0031011 C Ino80 complex
FPKM:1.92 TPM:1.78
previous next from show/39865

- SilkBase 1999-2023 -