SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5221 A_BomaMG_comp15052_c0_seq1
219bp
FPKM:2.95 TPM:2.73
5222 A_BomaMG_comp150546_c0_seq1
464bp
PREDICTED:_ral_GTPase-activating_protein_subunit_beta-like_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005829 C cytosol
GO:0032484 P Ral protein signal transduction
GO:0032880 P regulation of protein localization
GO:0046982 F protein heterodimerization activity
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0060178 P regulation of exocyst localization
GO:0061024 P membrane organization
GO:0090630 P activation of GTPase activity
FPKM:2.88 TPM:2.67
5223 A_BomaMG_comp15054_c0_seq1
1895bp
very_low-density_lipoprotein_receptor_isoform_1_precursor_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001948 F protein binding
GO:0005509 F calcium ion binding
GO:0005615 C extracellular space
GO:0005905 C clathrin-coated pit
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021517 P ventral spinal cord development
GO:0030229 F very-low-density lipoprotein particle receptor activity
GO:0034185 F apolipoprotein binding
GO:0034189 F very-low-density lipoprotein particle binding
GO:0034361 C very-low-density lipoprotein particle
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0034447 P very-low-density lipoprotein particle clearance
GO:0038025 F reelin receptor activity
GO:0038026 P reelin-mediated signaling pathway
GO:0043235 C receptor complex
GO:0045860 P positive regulation of protein kinase activity
GO:0048306 F calcium-dependent protein binding
GO:0048813 P dendrite morphogenesis
GO:1900006 P positive regulation of dendrite development
FPKM:5.19 TPM:4.81
5224 A_BomaMG_comp15055_c0_seq1
205bp
FPKM:4.83 TPM:4.48
5225 A_BomaMG_comp15056_c0_seq1
310bp
FPKM:1.31 TPM:1.21
5226 A_BomaMG_comp150577_c0_seq1
392bp
GD19547_[Drosophila_simulans]
FPKM:2.42 TPM:2.24
5227 A_BomaMG_comp15057_c0_seq1
357bp
FPKM:1.54 TPM:1.43
5228 A_BomaMG_comp150581_c0_seq1
668bp
PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
FPKM:2.02 TPM:1.87
5229 A_BomaMG_comp15058_c0_seq1
268bp
metal-dependent_hydrolase_[Lacinutrix_mariniflava]
FPKM:2.65 TPM:2.46
5230 A_BomaMG_comp150593_c0_seq1
383bp
NMT1/THI5_like_protein_[bacterium_YEK0313]
FPKM:1.68 TPM:1.56
5231 A_BomaMG_comp15059_c0_seq1
560bp
hypothetical_protein_KGM_11337_[Danaus_plexippus]
FPKM:7.07 TPM:6.55
5232 A_BomaMG_comp15060_c0_seq1
351bp
PREDICTED:_uncharacterized_protein_LOC105841982_[Bombyx_mori]
FPKM:2.00 TPM:1.85
5233 A_BomaMG_comp15061_c0_seq1
480bp
hypothetical_protein_L484_001794_[Morus_notabilis]
FPKM:1.70 TPM:1.58
5234 A_BomaMG_comp15061_c1_seq1
718bp
FPKM:2.27 TPM:2.10
5235 A_BomaMG_comp150623_c0_seq1
247bp
NADPH_oxidoreductase_[Bombyx_mori]
FPKM:0.97 TPM:0.90
5236 A_BomaMG_comp15062_c0_seq1
323bp
FPKM:2.38 TPM:2.21
5237 A_BomaMG_comp15062_c1_seq1
835bp
FPKM:2.54 TPM:2.35
5238 A_BomaMG_comp150648_c0_seq1
465bp
FPKM:2.39 TPM:2.21
5239 A_BomaMG_comp15064_c0_seq1
234bp
1-acyl-sn-glycerol-3-phosphate_acyltransferase_[Alloactinosynnema_sp._L-07]
FPKM:1.73 TPM:1.61
5240 A_BomaMG_comp15064_c1_seq1
452bp
FPKM:1.50 TPM:1.39
5241 A_BomaMG_comp15065_c0_seq1
343bp
hypothetical_protein_H101_02049_[Trichophyton_interdigitale_H6]
FPKM:2.09 TPM:1.94
5242 A_BomaMG_comp15066_c0_seq1
209bp
FPKM:0.00 TPM:0.00
5243 A_BomaMG_comp15066_c1_seq1
427bp
FPKM:1.93 TPM:1.79
5244 A_BomaMG_comp15068_c0_seq1
651bp
asparagine_synthetase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004066 F asparagine synthase (glutamine-hydrolyzing) activity
GO:0005524 F ATP binding
GO:0006529 P asparagine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016874 F ligase activity
GO:0070981 P L-asparagine biosynthetic process
FPKM:1.59 TPM:1.47
5245 A_BomaMG_comp150690_c0_seq1
386bp
FPKM:2.32 TPM:2.15
5246 A_BomaMG_comp150693_c0_seq1
250bp
PREDICTED:_AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
FPKM:6.05 TPM:5.60
5247 A_BomaMG_comp1506_c0_seq1
213bp
FPKM:2.47 TPM:2.28
5248 A_BomaMG_comp15070_c0_seq1
277bp
ABC_transporter_ATPase_[Paenibacillus_massiliensis]
FPKM:2.08 TPM:1.92
5249 A_BomaMG_comp150720_c0_seq1
296bp
hypothetical_protein_[Arenibacter_algicola]
FPKM:2.63 TPM:2.43
5250 A_BomaMG_comp15072_c0_seq1
395bp
PREDICTED:_uncharacterized_protein_LOC106139441_[Amyelois_transitella]
FPKM:1.75 TPM:1.62
previous next from show/39865

- SilkBase 1999-2023 -