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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
511 A_BomaMG_comp10915_c0_seq1
3947bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_5_[Amyelois_transitella]
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0015629 C actin cytoskeleton
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0033276 C transcription factor TFTC complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0043231 C intracellular membrane-bounded organelle
GO:0044212 F transcription cis-regulatory region binding
GO:0046983 F protein dimerization activity
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:2.71 TPM:2.51
512 A_BomaMG_comp10916_c0_seq1
1499bp
PREDICTED:_aminoacylase-1-like_[Bombyx_mori]
GO:0004046 F aminoacylase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006520 P cellular amino acid metabolic process
GO:0008152 P metabolic process
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:2.10 TPM:1.95
513 A_BomaMG_comp10916_c0_seq2
647bp
PREDICTED:_aminoacylase-1-like_[Bombyx_mori]
GO:0004046 F aminoacylase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006520 P cellular amino acid metabolic process
GO:0008152 P metabolic process
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:1.19 TPM:1.10
514 A_BomaMG_comp109171_c0_seq1
1945bp
PREDICTED:_protein_abrupt-like_isoform_X2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005704 C polytene chromosome band
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0007060 P male meiosis chromosome segregation
GO:0007141 P male meiosis I
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0010032 P meiotic chromosome condensation
GO:0016311 P dephosphorylation
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
FPKM:2.72 TPM:2.52
515 A_BomaMG_comp10917_c0_seq1
2376bp
Uncharacterized_protein_OBRU01_14583_[Operophtera_brumata]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0043547 P positive regulation of GTPase activity
GO:0055037 C recycling endosome
FPKM:2.74 TPM:2.54
516 A_BomaMG_comp10918_c0_seq1
797bp
Ashwin_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008150 P biological_process
GO:0048598 P embryonic morphogenesis
GO:0072669 C tRNA-splicing ligase complex
FPKM:1.61 TPM:1.49
517 A_BomaMG_comp10918_c0_seq2
785bp
Ashwin_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008150 P biological_process
GO:0048598 P embryonic morphogenesis
GO:0072669 C tRNA-splicing ligase complex
FPKM:1.95 TPM:1.81
518 A_BomaMG_comp109198_c0_seq1
320bp
FPKM:1.70 TPM:1.58
519 A_BomaMG_comp10919_c0_seq1
654bp
PREDICTED:_zinc_finger_protein_608-like_isoform_X1_[Bombyx_mori]
FPKM:3.58 TPM:3.32
520 A_BomaMG_comp1091_c0_seq1
223bp
FPKM:0.69 TPM:0.64
521 A_BomaMG_comp109229_c0_seq1
344bp
FPKM:4.16 TPM:3.85
522 A_BomaMG_comp10923_c0_seq1
1159bp
PREDICTED:_protein_CLP1_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005849 C mRNA cleavage factor complex
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
FPKM:3.39 TPM:3.14
523 A_BomaMG_comp10924_c0_seq1
2612bp
PREDICTED:_uncharacterized_protein_LOC101744657_[Bombyx_mori]
FPKM:2.78 TPM:2.58
524 A_BomaMG_comp10926_c0_seq1
494bp
PREDICTED:_cleavage_and_polyadenylation_specificity_factor_73_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0008409 F 5'-3' exonuclease activity
GO:0016787 F hydrolase activity
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:4.01 TPM:3.72
525 A_BomaMG_comp109271_c0_seq1
265bp
FPKM:4.70 TPM:4.35
526 A_BomaMG_comp10927_c0_seq1
2645bp
PREDICTED:_tyrosine-protein_kinase_Fps85D_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0007391 P dorsal closure
GO:0007394 P dorsal closure, elongation of leading edge cells
GO:0007411 P axon guidance
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019898 C extrinsic component of membrane
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042127 P regulation of cell population proliferation
GO:0045087 P innate immune response
GO:0046664 P dorsal closure, amnioserosa morphology change
GO:0051017 P actin filament bundle assembly
FPKM:2.64 TPM:2.44
527 A_BomaMG_comp10928_c0_seq1
1410bp
PREDICTED:_tau-tubulin_kinase_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006468 P protein phosphorylation
GO:0007224 P smoothened signaling pathway
GO:0008360 P regulation of cell shape
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030030 P cell projection organization
GO:0035869 C ciliary transition zone
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
FPKM:2.73 TPM:2.52
528 A_BomaMG_comp10929_c0_seq1
256bp
arsenic_ABC_transporter_ATPase_[Bacillus_thuringiensis]
FPKM:1.73 TPM:1.60
529 A_BomaMG_comp10929_c1_seq1
2185bp
PREDICTED:_phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_A_[Papilio_polytes]
GO:0000506 C glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0008194 F UDP-glycosyltransferase activity
GO:0009893 P positive regulation of metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016254 P preassembly of GPI anchor in ER membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0017176 F phosphatidylinositol N-acetylglucosaminyltransferase activity
FPKM:2.58 TPM:2.39
530 A_BomaMG_comp10930_c0_seq1
1705bp
putative_bisphosphate_nucleotidase_[Danaus_plexippus]
GO:0005737 C cytoplasm
GO:0006021 P inositol biosynthetic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006796 P phosphate-containing compound metabolic process
GO:0007165 P signal transduction
GO:0008934 F inositol monophosphate 1-phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0052832 F inositol monophosphate 3-phosphatase activity
GO:0052833 F inositol monophosphate 4-phosphatase activity
GO:0052834 F inositol monophosphate phosphatase activity
FPKM:2.12 TPM:1.97
531 A_BomaMG_comp10930_c0_seq2
1557bp
putative_bisphosphate_nucleotidase_[Danaus_plexippus]
GO:0005737 C cytoplasm
GO:0006021 P inositol biosynthetic process
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006796 P phosphate-containing compound metabolic process
GO:0007165 P signal transduction
GO:0008934 F inositol monophosphate 1-phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0052832 F inositol monophosphate 3-phosphatase activity
GO:0052833 F inositol monophosphate 4-phosphatase activity
GO:0052834 F inositol monophosphate phosphatase activity
FPKM:0.60 TPM:0.55
532 A_BomaMG_comp10931_c0_seq1
407bp
PREDICTED:_kelch-like_protein_8_[Fundulus_heteroclitus]
FPKM:3.31 TPM:3.06
533 A_BomaMG_comp109386_c0_seq1
298bp
hypothetical_protein_BRAFLDRAFT_129235_[Branchiostoma_floridae]
FPKM:2.30 TPM:2.13
534 A_BomaMG_comp10938_c0_seq1
1159bp
olfactory_receptor_[Bombyx_mori]
FPKM:2.84 TPM:2.63
535 A_BomaMG_comp10939_c0_seq1
217bp
FPKM:7.63 TPM:7.07
536 A_BomaMG_comp10940_c0_seq1
2911bp
PREDICTED:_WD_repeat-containing_protein_81_isoform_X3_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000776 C kinetochore
GO:0005739 C mitochondrion
GO:0005813 C centrosome
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0007097 P nuclear migration
GO:0007281 P germ cell development
GO:0008017 F microtubule binding
GO:0008090 P retrograde axonal transport
GO:0010923 P negative regulation of phosphatase activity
GO:0022008 P neurogenesis
GO:0031023 P microtubule organizing center organization
GO:0045502 F dynein complex binding
GO:0047496 P vesicle transport along microtubule
GO:1904115 C axon cytoplasm
GO:2000574 P obsolete regulation of microtubule motor activity
FPKM:2.78 TPM:2.57
537 A_BomaMG_comp10944_c0_seq1
2474bp
PREDICTED:_ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000963 P mitochondrial RNA processing
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006119 P oxidative phosphorylation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0022904 P respiratory electron transport chain
GO:0032508 P DNA duplex unwinding
GO:0044528 P regulation of mitochondrial mRNA stability
GO:0070131 P positive regulation of mitochondrial translation
GO:0090646 P mitochondrial tRNA processing
GO:0097222 P mitochondrial mRNA polyadenylation
FPKM:2.80 TPM:2.60
538 A_BomaMG_comp10946_c0_seq1
762bp
FPKM:2.92 TPM:2.70
539 A_BomaMG_comp10947_c0_seq1
2328bp
Prohormone-4_[Papilio_xuthus]
GO:0005576 C extracellular region
GO:0007218 P neuropeptide signaling pathway
FPKM:2.84 TPM:2.63
540 A_BomaMG_comp109489_c0_seq1
907bp
FPKM:3.07 TPM:2.84
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