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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4681 A_BomaMG_comp14576_c0_seq1
592bp
PREDICTED:_uncharacterized_protein_LOC101742417_[Bombyx_mori]
FPKM:1.24 TPM:1.15
4682 A_BomaMG_comp14577_c0_seq1
254bp
hypothetical_protein_[Salinisphaera_hydrothermalis]
FPKM:1.33 TPM:1.23
4683 A_BomaMG_comp14577_c1_seq1
306bp
transmembrane_protein_16K_[Gaeumannomyces_graminis_var._tritici_R3-111a-1]
FPKM:1.08 TPM:1.00
4684 A_BomaMG_comp14578_c0_seq1
329bp
PREDICTED:_uncharacterized_protein_LOC101743190_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0042802 F identical protein binding
FPKM:1.83 TPM:1.69
4685 A_BomaMG_comp14579_c0_seq1
231bp
FPKM:3.63 TPM:3.36
4686 A_BomaMG_comp14579_c1_seq1
393bp
regulatory_protein_AmpE_[Phaseolibacter_flectens]
FPKM:1.12 TPM:1.04
4687 A_BomaMG_comp1457_c0_seq1
254bp
PREDICTED:_uncharacterized_protein_LOC101744721_isoform_X2_[Bombyx_mori]
FPKM:1.33 TPM:1.23
4688 A_BomaMG_comp14580_c0_seq1
256bp
FPKM:1.73 TPM:1.60
4689 A_BomaMG_comp14580_c1_seq1
212bp
FPKM:0.00 TPM:0.00
4690 A_BomaMG_comp14581_c0_seq1
2140bp
PREDICTED:_DNA_repair_and_recombination_protein_RAD54-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000711 P meiotic DNA repair synthesis
GO:0000724 P double-strand break repair via homologous recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006338 P chromatin remodeling
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0043150 P DNA synthesis involved in double-strand break repair via homologous recombination
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:2.23 TPM:2.06
4691 A_BomaMG_comp14581_c1_seq1
347bp
PREDICTED:_DNA_repair_and_recombination_protein_RAD54-like_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000711 P meiotic DNA repair synthesis
GO:0000724 P double-strand break repair via homologous recombination
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006417 P regulation of translation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008298 P intracellular mRNA localization
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0030261 P chromosome condensation
GO:0043150 P DNA synthesis involved in double-strand break repair via homologous recombination
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:2.04 TPM:1.89
4692 A_BomaMG_comp14582_c0_seq1
362bp
FPKM:0.94 TPM:0.87
4693 A_BomaMG_comp14583_c0_seq1
467bp
FPKM:2.38 TPM:2.20
4694 A_BomaMG_comp14583_c1_seq1
307bp
FPKM:0.80 TPM:0.74
4695 A_BomaMG_comp14584_c0_seq1
314bp
PREDICTED:_aldo-keto_reductase_AKR2E4-like_isoform_X2_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.52 TPM:1.41
4696 A_BomaMG_comp14584_c1_seq1
278bp
PREDICTED:_aldo-keto_reductase_AKR2E4-like_[Papilio_polytes]
GO:0004033 F aldo-keto reductase (NADP) activity
GO:0006805 P xenobiotic metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.72 TPM:1.59
4697 A_BomaMG_comp14585_c0_seq1
357bp
FPKM:1.54 TPM:1.43
4698 A_BomaMG_comp14586_c0_seq1
248bp
PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0016592 C mediator complex
GO:0030518 P intracellular steroid hormone receptor signaling pathway
GO:0070847 C core mediator complex
FPKM:2.86 TPM:2.65
4699 A_BomaMG_comp14587_c0_seq1
303bp
PREDICTED:_attractin-like_protein_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005886 C plasma membrane
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
FPKM:1.10 TPM:1.02
4700 A_BomaMG_comp14589_c0_seq1
234bp
hypothetical_protein_[Enterobacter_aerogenes]
FPKM:4.04 TPM:3.75
4701 A_BomaMG_comp1458_c0_seq1
359bp
PREDICTED:_protein_MCM10_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003682 F chromatin binding
GO:0003688 F DNA replication origin binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0016321 P female meiosis chromosome segregation
GO:0030261 P chromosome condensation
GO:0031298 C replication fork protection complex
GO:0035214 P eye-antennal disc development
GO:0042023 P DNA endoreduplication
GO:0045678 P positive regulation of R7 cell differentiation
GO:0045931 P positive regulation of mitotic cell cycle
GO:0046872 F metal ion binding
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:1901693 P negative regulation of compound eye retinal cell apoptotic process
FPKM:1.14 TPM:1.06
4702 A_BomaMG_comp14591_c0_seq1
383bp
FPKM:1.18 TPM:1.09
4703 A_BomaMG_comp14594_c0_seq1
329bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.60 TPM:1.48
4704 A_BomaMG_comp14599_c0_seq1
903bp
PREDICTED:_zinc_finger_BED_domain-containing_protein_4_[Bombyx_mori]
FPKM:1.22 TPM:1.13
4705 A_BomaMG_comp145_c0_seq1
234bp
FPKM:1.16 TPM:1.07
4706 A_BomaMG_comp14600_c0_seq1
558bp
PREDICTED:_histone-lysine_N-methyltransferase_EHMT2-like_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0002039 F p53 binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006306 P DNA methylation
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016279 F protein-lysine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0018026 P peptidyl-lysine monomethylation
GO:0018027 P peptidyl-lysine dimethylation
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0046974 F histone methyltransferase activity (H3-K9 specific)
GO:0046976 F histone methyltransferase activity (H3-K27 specific)
GO:0051567 P histone H3-K9 methylation
GO:0060992 P response to fungicide
GO:0070734 P histone H3-K27 methylation
GO:0070742 F C2H2 zinc finger domain binding
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:3.33 TPM:3.08
4707 A_BomaMG_comp146019_c0_seq1
205bp
PREDICTED:_patj_homolog_isoform_X1_[Bombyx_mori]
GO:0001736 P establishment of planar polarity
GO:0002009 P morphogenesis of an epithelium
GO:0005080 F protein kinase C binding
GO:0005515 F protein binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005918 C septate junction
GO:0007043 P cell-cell junction assembly
GO:0007163 P establishment or maintenance of cell polarity
GO:0007275 P multicellular organism development
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0016327 C apicolateral plasma membrane
GO:0016332 P establishment or maintenance of polarity of embryonic epithelium
GO:0016333 P morphogenesis of follicular epithelium
GO:0016334 P establishment or maintenance of polarity of follicular epithelium
GO:0032033 F myosin II light chain binding
GO:0034332 P adherens junction organization
GO:0034334 P adherens junction maintenance
GO:0035003 C subapical complex
GO:0035088 P establishment or maintenance of apical/basal cell polarity
GO:0035209 P pupal development
GO:0035509 P negative regulation of myosin-light-chain-phosphatase activity
GO:0045176 P apical protein localization
GO:0045179 C apical cortex
GO:0045186 P zonula adherens assembly
GO:0045196 P establishment or maintenance of neuroblast polarity
GO:0045494 P photoreceptor cell maintenance
FPKM:2.90 TPM:2.69
4708 A_BomaMG_comp14603_c0_seq1
236bp
FPKM:1.12 TPM:1.04
4709 A_BomaMG_comp14603_c0_seq2
211bp
FPKM:0.00 TPM:0.00
4710 A_BomaMG_comp14604_c0_seq1
256bp
hypothetical_protein_X777_16288_[Cerapachys_biroi]
FPKM:1.73 TPM:1.60
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