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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

4651

A_BomaMG_comp14552_c0_seq1

798bp

PREDICTED:_N-glycosylase/DNA_lyase_isoform_X2_[Amyelois_transitella]

GO:0003684	F	damaged DNA binding
GO:0003824	F	catalytic activity
GO:0003906	F	DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0004518	F	nuclease activity
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006281	P	DNA repair
GO:0006284	P	base-excision repair
GO:0006289	P	nucleotide-excision repair
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008152	P	metabolic process
GO:0008534	F	oxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0016787	F	hydrolase activity
GO:0016798	F	hydrolase activity, acting on glycosyl bonds
GO:0016829	F	lyase activity
GO:0019104	F	DNA N-glycosylase activity
GO:0034599	P	cellular response to oxidative stress
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis

FPKM:1.26 TPM:1.17

4652

A_BomaMG_comp14552_c1_seq1

214bp

PREDICTED:_N-glycosylase/DNA_lyase_isoform_X1_[Amyelois_transitella]

FPKM:4.84 TPM:4.48

4653

A_BomaMG_comp145535_c0_seq1

379bp

PREDICTED:_rho-associated_protein_kinase_isoform_X1_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0005815	C	microtubule organizing center
GO:0005856	C	cytoskeleton
GO:0005886	C	plasma membrane
GO:0006468	P	protein phosphorylation
GO:0006939	P	smooth muscle contraction
GO:0007266	P	Rho protein signal transduction
GO:0010825	P	positive regulation of centrosome duplication
GO:0016020	C	membrane
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0017048	F	small GTPase binding
GO:0030036	P	actin cytoskeleton organization
GO:0032956	P	regulation of actin cytoskeleton organization
GO:0035556	P	intracellular signal transduction
GO:0042752	P	regulation of circadian rhythm
GO:0046872	F	metal ion binding
GO:0048511	P	rhythmic process

FPKM:2.92 TPM:2.70

4654

A_BomaMG_comp14553_c0_seq1

399bp

PREDICTED:_DNA-directed_RNA_polymerase_I_subunit_RPA2_isoform_X1_[Amyelois_transitella]

GO:0001054	F	RNA polymerase I activity
GO:0003677	F	DNA binding
GO:0003899	F	DNA-directed 5'-3' RNA polymerase activity
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0005736	C	RNA polymerase I complex
GO:0006351	P	transcription, DNA-templated
GO:0006360	P	transcription by RNA polymerase I
GO:0016049	P	cell growth
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0022008	P	neurogenesis
GO:0032549	F	ribonucleoside binding
GO:0045793	P	positive regulation of cell size
GO:0046872	F	metal ion binding

FPKM:1.40 TPM:1.30

4655

A_BomaMG_comp14553_c1_seq1

266bp

DNA-directed_RNA_polymerase_I_subunit_RPA2_[Papilio_xuthus]

GO:0001054	F	RNA polymerase I activity
GO:0003677	F	DNA binding
GO:0003899	F	DNA-directed 5'-3' RNA polymerase activity
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0005736	C	RNA polymerase I complex
GO:0006351	P	transcription, DNA-templated
GO:0006360	P	transcription by RNA polymerase I
GO:0016049	P	cell growth
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0022008	P	neurogenesis
GO:0032549	F	ribonucleoside binding
GO:0045793	P	positive regulation of cell size
GO:0046872	F	metal ion binding

FPKM:1.94 TPM:1.79

4656

A_BomaMG_comp14554_c0_seq1

390bp

FPKM:0.65 TPM:0.60

4657

A_BomaMG_comp14555_c0_seq1

552bp

hypothetical_protein_[Vibrio_hyugaensis]

FPKM:1.19 TPM:1.10

4658

A_BomaMG_comp14556_c0_seq1

572bp

PREDICTED:_S-adenosylmethionine_mitochondrial_carrier_protein-like_[Amyelois_transitella]

GO:0000095	F	S-adenosyl-L-methionine transmembrane transporter activity
GO:0003735	F	structural constituent of ribosome
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0006412	P	translation
GO:0006810	P	transport
GO:0015805	P	S-adenosyl-L-methionine transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:1901962	P	S-adenosyl-L-methionine transmembrane transport

FPKM:1.30 TPM:1.21

4659

A_BomaMG_comp14556_c1_seq1

229bp

PREDICTED:_S-adenosylmethionine_mitochondrial_carrier_protein_homolog_[Plutella_xylostella]

GO:0000095	F	S-adenosyl-L-methionine transmembrane transporter activity
GO:0003735	F	structural constituent of ribosome
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0006412	P	translation
GO:0006810	P	transport
GO:0015805	P	S-adenosyl-L-methionine transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:1901962	P	S-adenosyl-L-methionine transmembrane transport

FPKM:2.49 TPM:2.31

4660

A_BomaMG_comp14557_c0_seq1

320bp

FPKM:2.19 TPM:2.03

4661

A_BomaMG_comp14558_c0_seq1

670bp

hypothetical_protein_RR48_14594_[Papilio_machaon]

FPKM:1.53 TPM:1.41

4662

A_BomaMG_comp1455_c0_seq1

246bp

Retrovirus-related_Pol_polyprotein_from_transposon_17.6,_partial_[Stegodyphus_mimosarum]

FPKM:2.45 TPM:2.27

4663

A_BomaMG_comp1455_c1_seq1

312bp

hypothetical_protein_QT05_C0040G0007_[archaeon_GW2011_AR13]

FPKM:1.29 TPM:1.19

4664

A_BomaMG_comp14560_c0_seq1

280bp

PREDICTED:_cysteine-rich_protein_2-binding_protein_isoform_X2_[Bombyx_mori]

GO:0000086	P	G2/M transition of mitotic cell cycle
GO:0004402	F	histone acetyltransferase activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005671	C	obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737	C	cytoplasm
GO:0008080	F	N-acetyltransferase activity
GO:0016573	P	histone acetylation
GO:0030274	F	LIM domain binding
GO:0043966	P	histone H3 acetylation

FPKM:0.67 TPM:0.62

4665

A_BomaMG_comp14560_c1_seq1

326bp

PREDICTED:_cysteine-rich_protein_2-binding_protein_isoform_X2_[Bombyx_mori]

FPKM:2.10 TPM:1.95

4666

A_BomaMG_comp14561_c0_seq1

230bp

PREDICTED:_bifunctional_heparan_sulfate_N-deacetylase/N-sulfotransferase_isoform_X2_[Papilio_polytes]

GO:0000137	C	Golgi cis cisterna
GO:0000139	C	Golgi membrane
GO:0003824	F	catalytic activity
GO:0005622	C	intracellular anatomical structure
GO:0005783	C	endoplasmic reticulum
GO:0005794	C	Golgi apparatus
GO:0005829	C	cytosol
GO:0006024	P	glycosaminoglycan biosynthetic process
GO:0006790	P	sulfur compound metabolic process
GO:0007166	P	cell surface receptor signaling pathway
GO:0007283	P	spermatogenesis
GO:0007367	P	segment polarity determination
GO:0007427	P	epithelial cell migration, open tracheal system
GO:0007428	P	primary branching, open tracheal system
GO:0007474	P	imaginal disc-derived wing vein specification
GO:0007507	P	heart development
GO:0007509	P	mesoderm migration involved in gastrulation
GO:0008146	F	sulfotransferase activity
GO:0008152	P	metabolic process
GO:0008543	P	fibroblast growth factor receptor signaling pathway
GO:0008587	P	imaginal disc-derived wing margin morphogenesis
GO:0015012	P	heparan sulfate proteoglycan biosynthetic process
GO:0015014	P	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0015016	F	[heparan sulfate]-glucosamine N-sulfotransferase activity
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016055	P	Wnt signaling pathway
GO:0016740	F	transferase activity
GO:0016787	F	hydrolase activity
GO:0030210	P	heparin biosynthetic process
GO:0045570	P	regulation of imaginal disc growth
GO:0048312	P	intracellular distribution of mitochondria
GO:0048488	P	synaptic vesicle endocytosis
GO:0060828	P	regulation of canonical Wnt signaling pathway
GO:0090097	P	regulation of BMP signaling pathway

FPKM:0.61 TPM:0.57

4667

A_BomaMG_comp145627_c0_seq1

477bp

hypothetical_protein_RR48_07370_[Papilio_machaon]

FPKM:2.29 TPM:2.12

4668

A_BomaMG_comp14562_c0_seq1

393bp

hypothetical_protein_RP20_CCG010945_[Aedes_albopictus]

FPKM:1.92 TPM:1.78

4669

A_BomaMG_comp14562_c1_seq1

490bp

transposase_[Hymenolepis_microstoma]

FPKM:0.99 TPM:0.92

4670

A_BomaMG_comp145648_c0_seq1

339bp

FPKM:2.79 TPM:2.58

4671

A_BomaMG_comp14564_c0_seq1

221bp

hypothetical_protein_[Mycobacterium_rufum]

FPKM:0.71 TPM:0.66

4672

A_BomaMG_comp14565_c0_seq1

419bp

PREDICTED:_actin-like_protein_6B_[Plutella_xylostella]

GO:0000790	C	chromatin
GO:0000978	F	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980	F	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003407	P	neural retina development
GO:0003682	F	chromatin binding
GO:0003713	F	transcription coactivator activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005886	C	plasma membrane
GO:0006281	P	DNA repair
GO:0006310	P	DNA recombination
GO:0006338	P	chromatin remodeling
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0006974	P	cellular response to DNA damage stimulus
GO:0007165	P	signal transduction
GO:0007399	P	nervous system development
GO:0016514	C	SWI/SNF complex
GO:0016568	P	chromatin organization
GO:0021510	P	spinal cord development
GO:0031011	C	Ino80 complex
GO:0031492	F	nucleosomal DNA binding
GO:0035267	C	NuA4 histone acetyltransferase complex
GO:0040008	P	regulation of growth
GO:0043044	P	chromatin remodeling
GO:0043234	C	protein-containing complex
GO:0043967	P	histone H4 acetylation
GO:0043968	P	histone H2A acetylation
GO:0071564	C	npBAF complex
GO:0090544	C	SWI/SNF superfamily-type complex
GO:1903146	P	regulation of autophagy of mitochondrion
GO:1903955	P	positive regulation of protein targeting to mitochondrion

FPKM:9.28 TPM:8.59

4673

A_BomaMG_comp14566_c0_seq1

279bp

FPKM:2.38 TPM:2.20

4674

A_BomaMG_comp14569_c0_seq1

394bp

putative_Zinc_finger_protein_91_[Danaus_plexippus]

GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005515	F	protein binding
GO:0005622	C	intracellular anatomical structure
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding