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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4711 A_BomaMG_comp14606_c0_seq1
311bp
FPKM:1.82 TPM:1.68
4712 A_BomaMG_comp14606_c1_seq1
244bp
FPKM:1.01 TPM:0.93
4713 A_BomaMG_comp14607_c0_seq1
247bp
PREDICTED:_nucleobindin-2_isoform_X5_[Strongylocentrotus_purpuratus]
FPKM:2.42 TPM:2.24
4714 A_BomaMG_comp14608_c0_seq1
239bp
PREDICTED:_protein_FAR1-RELATED_SEQUENCE_6-like_[Brachypodium_distachyon]
FPKM:1.61 TPM:1.49
4715 A_BomaMG_comp14609_c0_seq1
298bp
PREDICTED:_uncharacterized_protein_LOC106139675_isoform_X2_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.87 TPM:2.66
4716 A_BomaMG_comp1460_c0_seq1
464bp
FPKM:1.20 TPM:1.11
4717 A_BomaMG_comp14611_c0_seq1
510bp
FPKM:1.44 TPM:1.34
4718 A_BomaMG_comp14615_c0_seq1
467bp
PREDICTED:_titin_[Bombyx_mori]
FPKM:1.05 TPM:0.97
4719 A_BomaMG_comp14615_c0_seq2
508bp
PREDICTED:_microtubule-associated_protein_futsch-like_isoform_X2_[Papilio_xuthus]
FPKM:0.64 TPM:0.59
4720 A_BomaMG_comp14616_c0_seq1
699bp
PREDICTED:_uncharacterized_protein_LOC106142350_[Amyelois_transitella]
FPKM:1.18 TPM:1.09
4721 A_BomaMG_comp14617_c0_seq1
304bp
putative_ABC_transporter,_partial_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
FPKM:1.92 TPM:1.78
4722 A_BomaMG_comp14618_c0_seq1
297bp
PREDICTED:_irregular_chiasm_C-roughest_protein-like_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
FPKM:1.74 TPM:1.61
4723 A_BomaMG_comp14618_c1_seq1
228bp
PREDICTED:_irregular_chiasm_C-roughest_protein-like_[Bombyx_mori]
FPKM:3.80 TPM:3.52
4724 A_BomaMG_comp14619_c0_seq1
304bp
FPKM:1.64 TPM:1.52
4725 A_BomaMG_comp14620_c0_seq1
263bp
FPKM:2.40 TPM:2.22
4726 A_BomaMG_comp14621_c0_seq1
253bp
FPKM:1.35 TPM:1.25
4727 A_BomaMG_comp14622_c0_seq1
284bp
PREDICTED:_serine/threonine-protein_kinase_NLK_isoform_X2_[Amyelois_transitella]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004707 F MAP kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0046872 F metal ion binding
GO:0050821 P protein stabilization
FPKM:1.95 TPM:1.80
4728 A_BomaMG_comp14623_c0_seq1
259bp
major_royal_jelly_protein_1-like_precursor_[Bombyx_mori]
FPKM:1.67 TPM:1.55
4729 A_BomaMG_comp14624_c0_seq1
328bp
PREDICTED:_probable_cation-transporting_ATPase_13A3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005887 C integral component of plasma membrane
GO:0006812 P cation transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0098655 P cation transmembrane transport
FPKM:2.30 TPM:2.13
4730 A_BomaMG_comp14625_c0_seq1
573bp
FPKM:3.29 TPM:3.05
4731 A_BomaMG_comp14625_c1_seq1
255bp
FPKM:1.75 TPM:1.62
4732 A_BomaMG_comp14626_c0_seq1
503bp
FPKM:1.48 TPM:1.37
4733 A_BomaMG_comp14627_c0_seq1
277bp
PREDICTED:_probable_ATP-dependent_RNA_helicase_pitchoune_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008186 F ATP-dependent activity, acting on RNA
GO:0016787 F hydrolase activity
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0042274 P ribosomal small subunit biogenesis
GO:1990417 P snoRNA release from pre-rRNA
FPKM:2.77 TPM:2.57
4734 A_BomaMG_comp14627_c1_seq1
251bp
PREDICTED:_probable_ATP-dependent_RNA_helicase_pitchoune_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
FPKM:2.76 TPM:2.55
4735 A_BomaMG_comp146284_c0_seq1
839bp
PREDICTED:_putative_nuclease_HARBI1_[Acyrthosiphon_pisum]
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.65 TPM:1.53
4736 A_BomaMG_comp14630_c0_seq1
273bp
FPKM:1.80 TPM:1.67
4737 A_BomaMG_comp146322_c0_seq1
412bp
PREDICTED:_TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_[Amyelois_transitella]
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0043966 P histone H3 acetylation
FPKM:3.24 TPM:3.00
4738 A_BomaMG_comp14632_c0_seq1
299bp
FPKM:2.57 TPM:2.38
4739 A_BomaMG_comp14633_c0_seq1
534bp
hypothetical_protein_[Spirosoma_panaciterrae]
FPKM:1.73 TPM:1.60
4740 A_BomaMG_comp14634_c0_seq1
324bp
PREDICTED:_coiled-coil_domain-containing_protein_R3HCC1L_isoform_X1_[Bombyx_mori]
FPKM:1.42 TPM:1.31
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