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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4231 A_BomaMG_comp14202_c1_seq1
379bp
PREDICTED:_uncharacterized_protein_LOC101743023_[Bombyx_mori]
FPKM:1.89 TPM:1.75
4232 A_BomaMG_comp14203_c0_seq1
300bp
PREDICTED:_protein_phosphatase_1A-like_[Amphimedon_queenslandica]
FPKM:2.26 TPM:2.09
4233 A_BomaMG_comp14203_c1_seq1
248bp
FPKM:0.95 TPM:0.88
4234 A_BomaMG_comp14205_c0_seq1
327bp
FPKM:2.32 TPM:2.15
4235 A_BomaMG_comp14206_c0_seq1
1799bp
PREDICTED:_protein_shuttle_craft_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:2.89 TPM:2.67
4236 A_BomaMG_comp14206_c1_seq1
254bp
PREDICTED:_protein_shuttle_craft_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:3.55 TPM:3.28
4237 A_BomaMG_comp14207_c0_seq1
533bp
PREDICTED:_connectin-like_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007275 P multicellular organism development
GO:0007413 P axonal fasciculation
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016200 P synaptic target attraction
GO:0031225 C anchored component of membrane
GO:0031594 C neuromuscular junction
GO:0044295 C axonal growth cone
FPKM:1.35 TPM:1.25
4238 A_BomaMG_comp14208_c0_seq1
358bp
FPKM:5.95 TPM:5.51
4239 A_BomaMG_comp14208_c1_seq1
271bp
PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Plutella_xylostella]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
FPKM:2.94 TPM:2.72
4240 A_BomaMG_comp14209_c0_seq1
208bp
PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X2_[Bombyx_mori]
FPKM:0.45 TPM:0.42
4241 A_BomaMG_comp14209_c0_seq2
208bp
PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X2_[Bombyx_mori]
FPKM:0.45 TPM:0.42
4242 A_BomaMG_comp14209_c0_seq3
272bp
PREDICTED:_adenomatous_polyposis_coli_protein-like_isoform_X1_[Bombyx_mori]
FPKM:2.91 TPM:2.70
4243 A_BomaMG_comp14210_c0_seq1
760bp
tartrate_dehydrogenase_[Streptomyces_sp._NRRL_F-5008]
FPKM:1.75 TPM:1.62
4244 A_BomaMG_comp142115_c0_seq1
239bp
PREDICTED:_wiskott-Aldrich_syndrome_protein_family_member_3_[Amyelois_transitella]
FPKM:7.53 TPM:6.97
4245 A_BomaMG_comp14211_c0_seq1
257bp
PREDICTED:_ankyrin_repeat_and_LEM_domain-containing_protein_2,_partial_[Bombyx_mori]
FPKM:2.14 TPM:1.98
4246 A_BomaMG_comp14211_c1_seq1
205bp
PREDICTED:_ankyrin_repeat_and_LEM_domain-containing_protein_2,_partial_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007084 P mitotic nuclear membrane reassembly
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0035307 P positive regulation of protein dephosphorylation
GO:0042326 P negative regulation of phosphorylation
GO:0051301 P cell division
GO:0051721 F protein phosphatase 2A binding
FPKM:3.87 TPM:3.58
4247 A_BomaMG_comp14212_c0_seq1
517bp
FPKM:1.72 TPM:1.59
4248 A_BomaMG_comp14212_c1_seq1
793bp
PREDICTED:_coronin-7_[Bombyx_mori]
FPKM:1.66 TPM:1.54
4249 A_BomaMG_comp14213_c0_seq1
233bp
19.5_kDa_heat_shock_protein_[Bombyx_mori]
GO:0005212 F structural constituent of eye lens
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
FPKM:0.59 TPM:0.54
4250 A_BomaMG_comp14214_c0_seq1
310bp
PREDICTED:_intraflagellar_transport_protein_140_homolog_[Amyelois_transitella]
FPKM:2.09 TPM:1.94
4251 A_BomaMG_comp142157_c0_seq1
489bp
daughters_against_dpp,_partial_[Papilio_xuthus]
FPKM:3.09 TPM:2.86
4252 A_BomaMG_comp14215_c0_seq1
642bp
PREDICTED:_RRP12-like_protein_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0048812 P neuron projection morphogenesis
FPKM:1.32 TPM:1.23
4253 A_BomaMG_comp14215_c1_seq1
646bp
PREDICTED:_RRP12-like_protein_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0048812 P neuron projection morphogenesis
FPKM:1.75 TPM:1.62
4254 A_BomaMG_comp14216_c0_seq1
430bp
PREDICTED:_alpha-latrotoxin-Lhe1a-like_isoform_X2_[Bombyx_mori]
FPKM:1.23 TPM:1.14
4255 A_BomaMG_comp142170_c0_seq1
240bp
hypothetical_protein_[Pseudomonas_aeruginosa]
FPKM:2.65 TPM:2.46
4256 A_BomaMG_comp14217_c0_seq1
206bp
FPKM:6.63 TPM:6.14
4257 A_BomaMG_comp14217_c1_seq1
208bp
chymotrypsin-like_serine_protease_precursor,_partial_[Diatraea_saccharalis]
FPKM:2.72 TPM:2.52
4258 A_BomaMG_comp14219_c0_seq1
348bp
Poly(U)-binding-splicing_factor_half_pint_[Papilio_xuthus]
FPKM:0.98 TPM:0.91
4259 A_BomaMG_comp14219_c0_seq2
476bp
FPKM:1.63 TPM:1.51
4260 A_BomaMG_comp1421_c0_seq1
437bp
FPKM:1.06 TPM:0.98
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