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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
391 A_BomaMG_comp10815_c0_seq1
217bp
hypothetical_protein_[Gracilimonas_tropica]
FPKM:0.76 TPM:0.71
392 A_BomaMG_comp10817_c0_seq1
494bp
PREDICTED:_uncharacterized_protein_LOC101742818_[Bombyx_mori]
FPKM:1.09 TPM:1.01
393 A_BomaMG_comp108186_c0_seq1
1572bp
PREDICTED:_probable_glutamate--tRNA_ligase,_mitochondrial_[Amyelois_transitella]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004818 F glutamate-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006424 P glutamyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070127 P tRNA aminoacylation for mitochondrial protein translation
FPKM:2.73 TPM:2.52
394 A_BomaMG_comp1081_c0_seq1
219bp
FPKM:1.47 TPM:1.36
395 A_BomaMG_comp108226_c0_seq1
2459bp
PREDICTED:_zinc_finger_protein_677-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.96 TPM:1.82
396 A_BomaMG_comp108262_c0_seq1
775bp
FPKM:2.85 TPM:2.64
397 A_BomaMG_comp108263_c0_seq1
818bp
PREDICTED:_nipped-B-like_protein_A_[Bombyx_mori]
GO:0000795 C synaptonemal complex
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0008278 C cohesin complex
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0032116 C SMC loading complex
GO:0034088 P maintenance of mitotic sister chromatid cohesion
GO:0035327 C euchromatin
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0070193 P synaptonemal complex organization
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
FPKM:3.88 TPM:3.60
398 A_BomaMG_comp108265_c0_seq1
951bp
PREDICTED:_uncharacterized_protein_LOC106111606_[Papilio_polytes]
FPKM:2.51 TPM:2.32
399 A_BomaMG_comp108266_c0_seq1
1070bp
PREDICTED:_G_patch_domain-containing_protein_4_[Papilio_machaon]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003676 F nucleic acid binding
FPKM:2.48 TPM:2.29
400 A_BomaMG_comp10828_c0_seq1
209bp
FPKM:1.78 TPM:1.65
401 A_BomaMG_comp108293_c0_seq1
465bp
hypothetical_protein_KGM_07760_[Danaus_plexippus]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0006364 P rRNA processing
GO:0009267 P cellular response to starvation
GO:0022008 P neurogenesis
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0031118 P rRNA pseudouridine synthesis
GO:0031429 C box H/ACA snoRNP complex
GO:0042254 P ribosome biogenesis
FPKM:4.66 TPM:4.32
402 A_BomaMG_comp1082_c0_seq1
232bp
FPKM:0.00 TPM:0.00
403 A_BomaMG_comp108302_c0_seq1
897bp
PREDICTED:_TBC1_domain_family_member_20,_partial_[Bombyx_mori]
GO:0001675 P acrosome assembly
GO:0002088 P lens development in camera-type eye
GO:0005096 F GTPase activator activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007030 P Golgi organization
GO:0007283 P spermatogenesis
GO:0008584 P male gonad development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017137 F small GTPase binding
GO:0019068 P virion assembly
GO:0030173 C integral component of Golgi membrane
GO:0031965 C nuclear membrane
GO:0034389 P lipid droplet organization
GO:0043010 P camera-type eye development
GO:0043547 P positive regulation of GTPase activity
GO:0044829 P positive regulation by host of viral genome replication
GO:0046726 P positive regulation by virus of viral protein levels in host cell
GO:0070309 P lens fiber cell morphogenesis
GO:0072520 P seminiferous tubule development
GO:0090110 P COPII-coated vesicle cargo loading
GO:1902953 P positive regulation of ER to Golgi vesicle-mediated transport
FPKM:2.60 TPM:2.41
404 A_BomaMG_comp108310_c0_seq1
383bp
FPKM:2.86 TPM:2.65
405 A_BomaMG_comp108313_c0_seq1
649bp
translation_initiation_factor_1a_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005575 C cellular_component
GO:0006413 P translational initiation
GO:0008150 P biological_process
FPKM:3.24 TPM:3.00
406 A_BomaMG_comp108321_c0_seq1
488bp
cuticular_protein_RR-1_motif_23_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
FPKM:4.54 TPM:4.20
407 A_BomaMG_comp108335_c0_seq1
1576bp
PREDICTED:_angio-associated_migratory_cell_protein_[Amyelois_transitella]
GO:0001525 P angiogenesis
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0014909 P smooth muscle cell migration
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030154 P cell differentiation
GO:0045171 C intercellular bridge
FPKM:2.52 TPM:2.34
408 A_BomaMG_comp108346_c0_seq1
814bp
FPKM:2.89 TPM:2.68
409 A_BomaMG_comp108362_c0_seq1
971bp
PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1-like_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
FPKM:3.22 TPM:2.98
410 A_BomaMG_comp108416_c0_seq1
862bp
PREDICTED:_7,8-dihydro-8-oxoguanine_triphosphatase-like_[Papilio_polytes]
GO:0001669 C acrosomal vesicle
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006195 P purine nucleotide catabolic process
GO:0006203 P dGTP catabolic process
GO:0006281 P DNA repair
GO:0008413 F 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030515 F snoRNA binding
GO:0031410 C cytoplasmic vesicle
GO:0031965 C nuclear membrane
GO:0035539 F 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity
GO:0036219 F GTP diphosphatase activity
GO:0042262 P DNA protection
GO:0046061 P dATP catabolic process
GO:0046872 F metal ion binding
GO:0047693 F ATP diphosphatase activity
GO:0050072 F m7G(5')pppN diphosphatase activity
GO:0070062 C extracellular exosome
FPKM:2.84 TPM:2.63
411 A_BomaMG_comp108427_c0_seq1
1143bp
PREDICTED:_LOW_QUALITY_PROTEIN:_jmjC_domain-containing_protein_7_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.78 TPM:2.57
412 A_BomaMG_comp10844_c0_seq1
233bp
FPKM:1.76 TPM:1.63
413 A_BomaMG_comp108458_c0_seq1
781bp
PREDICTED:_exosome_complex_component_RRP46_[Amyelois_transitella]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006401 P RNA catabolic process
GO:0016075 P rRNA catabolic process
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
FPKM:3.67 TPM:3.40
414 A_BomaMG_comp10847_c0_seq1
831bp
PREDICTED:_protein_lin-54_homolog_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
FPKM:2.87 TPM:2.65
415 A_BomaMG_comp10848_c0_seq1
953bp
PREDICTED:_exosome_complex_component_RRP43-like_[Amyelois_transitella]
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
FPKM:3.12 TPM:2.88
416 A_BomaMG_comp108493_c0_seq1
1272bp
PREDICTED:_carboxypeptidase_D_isoform_X3_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0006909 P phagocytosis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007616 P long-term memory
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0040003 P chitin-based cuticle development
GO:0042302 F structural constituent of cuticle
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
FPKM:2.61 TPM:2.41
417 A_BomaMG_comp108499_c0_seq1
252bp
PREDICTED:_glycogen_debranching_enzyme_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004134 F 4-alpha-glucanotransferase activity
GO:0004135 F amylo-alpha-1,6-glucosidase activity
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0005980 P glycogen catabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:9.99 TPM:9.25
418 A_BomaMG_comp10849_c0_seq1
617bp
PREDICTED:_ankyrin-3-like,_partial_[Bombyx_mori]
GO:0002027 P regulation of heart rate
GO:0003283 P atrial septum development
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006874 P cellular calcium ion homeostasis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0008093 F cytoskeletal anchor activity
GO:0010628 P positive regulation of gene expression
GO:0010881 P regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
GO:0010882 P regulation of cardiac muscle contraction by calcium ion signaling
GO:0014704 C intercalated disc
GO:0016020 C membrane
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030315 C T-tubule
GO:0030507 F spectrin binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0030913 P paranodal junction assembly
GO:0031430 C M band
GO:0031647 P regulation of protein stability
GO:0031672 C A band
GO:0033292 P T-tubule organization
GO:0033365 P protein localization to organelle
GO:0034394 P protein localization to cell surface
GO:0034613 P cellular protein localization
GO:0036309 P protein localization to M-band
GO:0036371 P protein localization to T-tubule
GO:0042383 C sarcolemma
GO:0043005 C neuron projection
GO:0043034 C costamere
GO:0043268 P positive regulation of potassium ion transport
GO:0044325 F transmembrane transporter binding
GO:0045121 C membrane raft
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050821 P protein stabilization
GO:0051117 F ATPase binding
GO:0051279 P regulation of release of sequestered calcium ion into cytosol
GO:0051597 P response to methylmercury
GO:0051924 P regulation of calcium ion transport
GO:0051928 P positive regulation of calcium ion transport
GO:0055117 P regulation of cardiac muscle contraction
GO:0060307 P regulation of ventricular cardiac muscle cell membrane repolarization
GO:0070296 P sarcoplasmic reticulum calcium ion transport
GO:0070972 P protein localization to endoplasmic reticulum
GO:0072659 P protein localization to plasma membrane
GO:0072661 P protein localization to plasma membrane
GO:0086004 P regulation of cardiac muscle cell contraction
GO:0086005 P ventricular cardiac muscle cell action potential
GO:0086014 P atrial cardiac muscle cell action potential
GO:0086015 P SA node cell action potential
GO:0086046 P membrane depolarization during SA node cell action potential
GO:0086066 P atrial cardiac muscle cell to AV node cell communication
GO:0086070 P SA node cell to atrial cardiac muscle cell communication
GO:0086091 P regulation of heart rate by cardiac conduction
GO:0098907 P regulation of SA node cell action potential
GO:0098910 P regulation of atrial cardiac muscle cell action potential
GO:1901018 P positive regulation of potassium ion transmembrane transporter activity
GO:1901019 P regulation of calcium ion transmembrane transporter activity
GO:1901021 P positive regulation of calcium ion transmembrane transporter activity
GO:2001259 P positive regulation of cation channel activity
FPKM:4.59 TPM:4.25
419 A_BomaMG_comp1084_c0_seq1
252bp
PREDICTED:_coiled-coil_and_C2_domain-containing_protein_1-like_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.72 TPM:2.52
420 A_BomaMG_comp108501_c0_seq1
316bp
PREDICTED:_uncharacterized_protein_LOC101738802_[Bombyx_mori]
FPKM:5.26 TPM:4.87
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