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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3841 A_BomaMG_comp13927_c1_seq1
518bp
FPKM:1.81 TPM:1.68
3842 A_BomaMG_comp13928_c0_seq1
937bp
PREDICTED:_protein_lethal(2)denticleless_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0022008 P neurogenesis
GO:0051726 P regulation of cell cycle
FPKM:1.16 TPM:1.08
3843 A_BomaMG_comp139297_c0_seq1
319bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X3_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
FPKM:3.19 TPM:2.95
3844 A_BomaMG_comp1392_c0_seq1
281bp
FPKM:1.14 TPM:1.05
3845 A_BomaMG_comp1392_c0_seq2
321bp
FPKM:1.59 TPM:1.48
3846 A_BomaMG_comp13930_c0_seq1
305bp
PREDICTED:_macoilin-like_isoform_X2_[Lepisosteus_oculatus]
FPKM:1.63 TPM:1.51
3847 A_BomaMG_comp139311_c0_seq1
1517bp
PREDICTED:_probable_RNA_polymerase_II_nuclear_localization_protein_SLC7A6OS_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0007417 P central nervous system development
GO:0015031 P protein transport
GO:0021552 P midbrain-hindbrain boundary structural organization
GO:0061053 P somite development
FPKM:2.15 TPM:1.99
3848 A_BomaMG_comp139315_c0_seq1
448bp
PREDICTED:_uncharacterized_protein_LOC101740576_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002790 P peptide secretion
GO:0005102 F signaling receptor binding
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006497 P protein lipidation
GO:0006810 P transport
GO:0006911 P phagocytosis, engulfment
GO:0007040 P lysosome organization
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007584 P response to nutrient
GO:0008203 P cholesterol metabolic process
GO:0008509 F anion transmembrane transporter activity
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0010875 P positive regulation of cholesterol efflux
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019905 F syntaxin binding
GO:0030139 C endocytic vesicle
GO:0030301 P cholesterol transport
GO:0030819 P obsolete positive regulation of cAMP biosynthetic process
GO:0031267 F small GTPase binding
GO:0032367 P intracellular cholesterol transport
GO:0032489 P regulation of Cdc42 protein signal transduction
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034188 F apolipoprotein A-I receptor activity
GO:0034364 C high-density lipoprotein particle
GO:0034380 P high-density lipoprotein particle assembly
GO:0034616 P response to laminar fluid shear stress
GO:0038027 P apolipoprotein A-I-mediated signaling pathway
GO:0042157 P lipoprotein metabolic process
GO:0042158 P lipoprotein biosynthetic process
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043691 P reverse cholesterol transport
GO:0045121 C membrane raft
GO:0045332 P phospholipid translocation
GO:0045335 C phagocytic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0050702 P interleukin-1 beta production
GO:0051117 F ATPase binding
GO:0055085 P transmembrane transport
GO:0055091 P phospholipid homeostasis
GO:0055098 P cellular response to low-density lipoprotein particle stimulus
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:0060155 P platelet dense granule organization
GO:0071222 P cellular response to lipopolysaccharide
GO:0071300 P cellular response to retinoic acid
GO:0071397 P cellular response to cholesterol
GO:0098656 P anion transmembrane transport
FPKM:3.05 TPM:2.83
3849 A_BomaMG_comp13932_c0_seq1
549bp
PREDICTED:_muscleblind-like_protein_3_isoform_X2_[Caprimulgus_carolinensis]
FPKM:1.01 TPM:0.94
3850 A_BomaMG_comp139332_c0_seq1
363bp
FPKM:2.43 TPM:2.25
3851 A_BomaMG_comp13934_c0_seq1
498bp
PREDICTED:_uncharacterized_protein_LOC106129390_[Amyelois_transitella]
FPKM:2.25 TPM:2.08
3852 A_BomaMG_comp139353_c0_seq1
298bp
PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]
FPKM:5.17 TPM:4.79
3853 A_BomaMG_comp13935_c0_seq1
457bp
PREDICTED:_low-density_lipoprotein_receptor-related_protein_2_isoform_X2_[Bombyx_mori]
FPKM:1.11 TPM:1.03
3854 A_BomaMG_comp139366_c0_seq1
1127bp
FPKM:1.72 TPM:1.59
3855 A_BomaMG_comp139374_c0_seq1
338bp
FPKM:2.59 TPM:2.40
3856 A_BomaMG_comp139377_c0_seq1
397bp
Exportin-5_[Papilio_xuthus]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
FPKM:3.15 TPM:2.91
3857 A_BomaMG_comp13937_c0_seq1
354bp
hypothetical_protein_M404DRAFT_28330_[Pisolithus_tinctorius_Marx_270]
FPKM:3.53 TPM:3.27
3858 A_BomaMG_comp139382_c0_seq1
779bp
FPKM:2.15 TPM:1.99
3859 A_BomaMG_comp13938_c0_seq1
819bp
PREDICTED:_uncharacterized_protein_LOC106103828_isoform_X1_[Papilio_polytes]
FPKM:1.54 TPM:1.43
3860 A_BomaMG_comp139393_c0_seq1
378bp
PREDICTED:_LOW_QUALITY_PROTEIN:_disintegrin_and_metalloproteinase_domain-containing_protein_30-like_[Ornithorhynchus_anatinus]
FPKM:1.90 TPM:1.76
3861 A_BomaMG_comp13940_c0_seq1
955bp
PREDICTED:_synaptic_vesicle_glycoprotein_2C-like_[Bombyx_mori]
GO:0001669 C acrosomal vesicle
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0055085 P transmembrane transport
FPKM:1.84 TPM:1.70
3862 A_BomaMG_comp139411_c0_seq1
1218bp
PREDICTED:_zinc_finger_protein_699-like_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.06 TPM:1.90
3863 A_BomaMG_comp13941_c0_seq1
1031bp
hypothetical_protein_KGM_19412_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.35 TPM:1.25
3864 A_BomaMG_comp13942_c0_seq1
219bp
hypothetical_protein_JI57_03115_[Psychromonas_sp._PRT-SC03]
FPKM:0.00 TPM:0.00
3865 A_BomaMG_comp139432_c0_seq1
683bp
FPKM:2.16 TPM:2.00
3866 A_BomaMG_comp13943_c0_seq1
231bp
hypothetical_protein_[Actinomadura_atramentaria]
FPKM:1.21 TPM:1.12
3867 A_BomaMG_comp139445_c0_seq1
393bp
FPKM:2.56 TPM:2.37
3868 A_BomaMG_comp13944_c0_seq1
619bp
Type_IV_secretory_pathway_VirB4_component-like_protein_[Parcubacteria_group_bacterium_GW2011_GWB1_43_6]
FPKM:1.39 TPM:1.29
3869 A_BomaMG_comp13945_c0_seq1
277bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.69 TPM:0.64
3870 A_BomaMG_comp13945_c0_seq2
345bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.27 TPM:2.11
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