SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3691 A_BomaMG_comp13772_c0_seq1
244bp
FPKM:1.51 TPM:1.40
3692 A_BomaMG_comp13772_c0_seq2
244bp
FPKM:0.00 TPM:0.00
3693 A_BomaMG_comp13773_c0_seq1
220bp
PREDICTED:_uncharacterized_protein_LOC106141545_[Amyelois_transitella]
FPKM:2.89 TPM:2.68
3694 A_BomaMG_comp13775_c0_seq1
380bp
PREDICTED:_zinc_finger_protein_569-like_[Plutella_xylostella]
FPKM:1.37 TPM:1.26
3695 A_BomaMG_comp13776_c0_seq1
588bp
FPKM:1.17 TPM:1.08
3696 A_BomaMG_comp13776_c1_seq1
881bp
hypothetical_protein_B456_013G055700_[Gossypium_raimondii]
FPKM:1.94 TPM:1.79
3697 A_BomaMG_comp13777_c0_seq1
329bp
FPKM:2.29 TPM:2.12
3698 A_BomaMG_comp13778_c0_seq1
451bp
PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC2_[Plutella_xylostella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005856 C cytoskeleton
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
FPKM:1.26 TPM:1.17
3699 A_BomaMG_comp13779_c0_seq1
279bp
FPKM:0.00 TPM:0.00
3700 A_BomaMG_comp13779_c0_seq2
239bp
FPKM:2.15 TPM:1.99
3701 A_BomaMG_comp13780_c0_seq1
351bp
hypothetical_protein_KGM_16930_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000329 C fungal-type vacuole membrane
GO:0005524 F ATP binding
GO:0005773 C vacuole
GO:0005774 C vacuolar membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015086 F cadmium ion transmembrane transporter activity
GO:0015127 F bilirubin transmembrane transporter activity
GO:0015691 P cadmium ion transport
GO:0015723 P bilirubin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042144 P vacuole fusion, non-autophagic
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0070574 P cadmium ion transmembrane transport
FPKM:2.79 TPM:2.59
3702 A_BomaMG_comp13781_c0_seq1
355bp
PREDICTED:_IQ_motif_and_SEC7_domain-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030036 P actin cytoskeleton organization
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:1.17 TPM:1.08
3703 A_BomaMG_comp13781_c1_seq1
299bp
PREDICTED:_IQ_motif_and_SEC7_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030036 P actin cytoskeleton organization
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:1.71 TPM:1.58
3704 A_BomaMG_comp13782_c0_seq1
812bp
FPKM:2.79 TPM:2.59
3705 A_BomaMG_comp13784_c0_seq1
226bp
FPKM:1.96 TPM:1.82
3706 A_BomaMG_comp13784_c0_seq2
301bp
FPKM:1.40 TPM:1.30
3707 A_BomaMG_comp13785_c0_seq1
336bp
FPKM:1.97 TPM:1.82
3708 A_BomaMG_comp13785_c1_seq1
506bp
FPKM:1.15 TPM:1.06
3709 A_BomaMG_comp13787_c0_seq1
488bp
hypothetical_protein_cypCar_00027411_[Cyprinus_carpio]
FPKM:1.55 TPM:1.43
3710 A_BomaMG_comp13788_c0_seq1
622bp
PREDICTED:_ataxin-7-like_protein_1_[Amyelois_transitella]
FPKM:1.54 TPM:1.42
3711 A_BomaMG_comp13788_c1_seq1
361bp
PREDICTED:_ataxin-7-like_protein_1_[Amyelois_transitella]
FPKM:0.94 TPM:0.87
3712 A_BomaMG_comp13790_c0_seq1
971bp
PREDICTED:_WD_repeat_and_FYVE_domain-containing_protein_3_[Bombyx_mori]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
FPKM:1.55 TPM:1.43
3713 A_BomaMG_comp13791_c0_seq1
234bp
FPKM:2.31 TPM:2.14
3714 A_BomaMG_comp13792_c0_seq1
343bp
PREDICTED:_neutral_endopeptidase_24.11_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:2.09 TPM:1.94
3715 A_BomaMG_comp13794_c0_seq1
438bp
PREDICTED:_uncharacterized_protein_LOC106131525_[Amyelois_transitella]
FPKM:1.59 TPM:1.47
3716 A_BomaMG_comp13795_c0_seq1
497bp
hypothetical_protein_M513_05397_[Trichuris_suis]
FPKM:3.33 TPM:3.08
3717 A_BomaMG_comp13796_c0_seq1
433bp
PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Polistes_dominula]
FPKM:0.94 TPM:0.87
3718 A_BomaMG_comp13797_c0_seq1
267bp
hypothetical_protein_ASPCAL03883_[Aspergillus_calidoustus]
FPKM:1.15 TPM:1.06
3719 A_BomaMG_comp13798_c0_seq1
643bp
FPKM:1.47 TPM:1.36
3720 A_BomaMG_comp138011_c0_seq1
313bp
PREDICTED:_nesprin-1_isoform_X12_[Cephus_cinctus]
FPKM:3.33 TPM:3.08
previous next from show/39865

- SilkBase 1999-2023 -